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Graphing and statistics framework for the NS-2 discrete event simulator. This has been used for several years by various researchers and engineering classes. It pops up windows or generates graphs suitable for inclusion in latex or html documents.
The Fung-Calc is an advanced, yet easy to use graphing calculator that supports graphing in both 2D and 3D. Several different plot types are available and graphs can be animated.
A modular and extensible system of Perl scripts (mostly) to monitor hosts and networking gear via SNMP and it's own collection servers. Uses RRDTool for storage and graphing.
PGGT (Performance Gathering and Graphing Tools) is a set of tools for gathering and graphing the information collected by the *stat suite of commands: iostat, vmstat, netstat.
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MRTG-PME is a set of performance monitoring extensions to MRTG that allow historical graphing of OS performance data (CPU, memory, paging, disk, etc.) for Linux, Solaris and BSD. With no SNMP required, PME is arguably more secure than standard MRTG.