Search Results for "dna"
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Showing 18 open source projects for "dna"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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nuwa-skill
Mental models, decision heuristics, expressing DNA
nuwa-skill is an AI-oriented project focused on defining, managing, and executing modular “skills” that can be used by intelligent agents or automation systems. It provides a framework for organizing capabilities into reusable units that can be invoked dynamically depending on context or user input. The project is designed to integrate with AI systems, enabling them to perform structured tasks such as data retrieval, processing, or interaction with external services. It emphasizes modularity... -
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Marin
Framework for research and development of foundation models
...Experiments and decisions are documented as they occur, including unsuccessful approaches. The framework is primarily used for large language models but has also supported audio-text, DNA, and protein modeling research. Experiments are expressed as dependent steps that execute in topological order, enabling reproducible training workflows. Marin also provides model checkpoints, training recipes, scaling research, documentation, and reusable infrastructure for large-scale experiments. -
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AWS ParallelCluster Cookbook
The Chef cookbook used to build and bootstrap AWS ParallelCluster
...AWS ParallelCluster facilitates both quick start proof of concepts (POCs) and production deployments. You can build higher-level workflows, such as a Genomics portal that automates the entire DNA sequencing workflow, on top of AWS ParallelCluster. Node.js is required by AWS CDK library used by ParallelCluster. -
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AWS ParallelCluster Node
Python package installed on the Amazon EC2 instances
...AWS ParallelCluster facilitates both quick start proof of concepts (POCs) and production deployments. You can build higher-level workflows, such as a Genomics portal that automates the entire DNA sequencing workflow, on top of AWS ParallelCluster. -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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Gemi
PCR primers / probes design from multiple & degenerate sequences
Gemi, an automated, fast, and easy-to-use bioinformatics tool with a user-friendly interface to design primers and probes for polymerase chain reaction (PCR). Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large dataset of sequences efficiently. Python source code is available upon request. Milestone: The tool reached about 3000 downloads sine 2012. ... -
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gendasm
Generic Code-Seeking Diassembler with Fuzzy-Function Analyzer
...It allows you to enter known starting vectors for a given code image for the micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its included Fuzzy Function Analyzer companion uses a DNA Sequence Alignment Algorithm to locate similar code in multiple binaries to facilitate reverse-engineering and/or code recovery. The original purpose of the Fuzzy Function Analyzer was to assist in code recovery where the source code for the current binaries got lost, yet the source code for an old binary was retained. The Fuzzy Function Analyzer allows you to match up known functions between the two binaries so you can concentrate on disassembling and reverse engineering the parts that are different and recover the code for the current binary that got lost. -
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SCIPIO ERP
eCommerce framework for multinational omnichannel installations
High-performance DNA for your custom ONLINE SHOP. A flexible composable commerce framework for international and complex multichannel webshops! Scipio ERP is a perfect fit for large-scale, multinational, multichannel operations. Our modern eCommerce store is optimized for a quick time-to-market. You can run multiple at the same time. Highly configurable products and prices, custom promotions and region-based offerings – the store can handle it all. -
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m6811dis
M6811 Code-Seeking Disassembler
The M6811 Code-Seeking Disassembler is a command-line tool that lets you enter known starting vectors for a given code image for the 6811 micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its companion Fuzzy Function Analyzer uses DNA Sequence Alignment Algorithms to locate similar code in multiple binaries, facilitating reverse-engineering. Originally written to analyze code from GM automotive engine controllers, but is useful anywhere a 6811 micro is being used. Version 1.0 was written in Borland Pascal in April 1996, and updated to v1.2 in June 1999. ... -
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Lexical Analyzer Generator Quex
Generator of lexical analyzers in C and C++. Unicode Supported.
The goal of this project is to provide a generator for lexical analyzers of maximum computational efficiency and maximum range of applications. This includes the support for Unicode (UTF8, UTF16, ...) and a large variety of other encodings directly and via nested converters such as ICU(tm) and IConv. Sophisticated buffer handling allows to operate on plain file streams, on sockets, or manually fed buffer content. 'Ready-to-build' examples explain related concepts and facilitate practical... -
Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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DMEAS
DNA Methylation Entropy Analysis Software
DMEAS (DNA Methylation Entropy Analysis Software) is written in C# language. It is a user-friendly DNA methylation analysis tool for DNA methylation pattern visualization and extraction, DNA methylation level calculation and DNA methylation entropy analysis. DMEAS progressively scans the mapping results of bisulfite sequencing reads to extract DNA methylation patterns for contiguous CpG dinucleotides. -
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GenLab abbreviation of Genetics Laboratory .It is a user-friendly bioinformatics tool to support your bioinformatics lab work. GenLab creates a software user-friendly environment, which makes users to make a large number of protein, DNA, and RNA sequence analysis and excellent graphical viewing. It also provides powerful environment for simulations of Protein 3D molecular models. GenLab typically provides: •User-friendly graphical tools used for finding and working with relevant regions of DNA, RNA, and protein sequences. •Full integration of data input, data management, calculation results. ...
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Palex is a two-stage biological sequence searching system. Library will contain functions for searching patterns, palindromes and structures in DNA sequence.
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The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in structural biology to facilitate the development of molecular modeling, design and analysis tools.
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A concise example of the classical genetic algorithm, with a fancy windows terminal display. Features DNA editing, save/load, customizable constraints and statistics logging.
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RepeatFinder is a command line tool for generating non-overlapping matches of microsatellite DNA from FASTA format code.
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DNA is an open, flexible and extensible deep network analyzer software server and software architecture for gathering and analyzing network packets, network sessions and applications protocols, passively off enterprise class networks.
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A collection of Java programs/tools/libraries. Current Project is jdna-jig, a Java Image Gallery for creating static image galleries from the command line.
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Simplify and speed up design processes of multimedia projects using this framework application. You may create nearly any file format out of ONE draft or create your own screenpainter application using the construction kit.
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