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HyperSQL is like a doxygen plus javadoc for SQL, hypermapping SQL views, packages, procedures, and functions to HTML source code listings and showing all code locations where these are used.
Epydoc is a tool for generating API documentation for Python modules,
based on their docstrings. Epydoc supports two output formats (HTML
and PDF), and four markup languages for docstrings (Epytext, Javadoc,
ReStructuredText, and plaintext).
Tools for extracting and transforming XML-like mark-up, embedded in source code comments, into proper external entities or well-formed XML files. Can be used for JavaDoc-like "literate programming", or embedding other build-related or CM metadata.