Showing 5 open source projects for "sbml"

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    SBW (Systems Biology Workbench)

    SBW (Systems Biology Workbench)

    Framework for Systems Biology

    ...It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM.
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    Downloads: 3 This Week
    Last Update:
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  • 2
    SBML Layout: Graphical SBML Annotations
    The SBMLLayout Project provides libraries and tools for handling layout and render information of SBML Models. Supported are SBML Layout / Render Extension, CellDesigner annotations and JDesigner annotations.
    Downloads: 0 This Week
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  • 3
    RANGE: produce random genetic transcription networks in the NEMO language, which when compiled outputs models in Systems Biology Markup Language. Generate synthetic microarray data, or use NEMO alone to SBML-ize a network, or visualize it in cytoscape.
    Downloads: 1 This Week
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  • 4
    The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network. Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!
    Downloads: 0 This Week
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  • 5
    Narrator is a graphical modelling tool for the description of dynamical systems and processes. Narrator is SBML compatible.
    Downloads: 0 This Week
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