Search Results for "alignment" - Page 3

iMet-Q (intelligent Metabolomic Quantitation) is an automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. It has a complete quantitation procedure for noise removal, peak detection and peak alignment. In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv and txt format. The software source code is freely available under the license of GPL2.

The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host.

...The command line tools of Hadoop-BAM should be understandable to all users, but they are limited in scope. See the SeqPig project for a higher-level interface to the file formats supported by Hadoop-BAM: http://seqpig.sourceforge.net See Seal for Hadoop-based read alignment tools, Seal: http://biodoop-seal.sourceforge.net

ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ...

Converts Qt designer ui files to tcl/tck script. Handled classes: - QLabel - QLineEdit - QPushButton

About: 1) Projects helps Java - SWING developers to develop UI forms very faster. 2) API contains reusable Components & Layouts that developers can directly use in their projects. 3) Just include project JAR file in your existing project then import and use all features (refer JavaWizardDevelopmentDocumentation) * Don't worry about Java's complex layouts, just pass your components as parameters to our "MyLayout" class and we'll do it for you. * New & pre-aligned UI components like...

...S-Match contains implementations of the semantic matching, minimal semantic matching and structure preserving semantic matching algorithms. S-Match applies as a solution in many fields, including: information integration, ontology evolution and alignment, peer-to-peer information sharing, digital libraries integration, web service composition, agent communication, and query answering on the web. S-Match is extendable to host new algorithms.

CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads.

...Rather than a “hard reset” that zeroes everything, it preserves sensible defaults for elements while fixing inconsistencies and edge cases that vary between engines. The project documents why each rule exists, targeting real-world quirks such as form control alignment, typographic defaults, and HTML5 element rendering. It is deliberately minimal and stable, making it a safe foundation for both custom design systems and heavyweight frameworks. Because it normalizes only what’s necessary, it plays well with component libraries and avoids surprising overrides that can lead to fragile CSS. Teams adopt it to reduce cross-browser bugs, speed up layout work, and start with predictable typography, spacing, and element behavior.

hwk is an easy-to-use application used to attack and discover wireless networks. It's providing various modes such as authentication/deauthentication flood, beacon and probe response fuzzing.

Eskil is a graphical tool to view the differences between files and directories. It supports version management and patch files and has various preprocessing and alignment options to improve the display of tricky diffs.

...The framework includes mixins, modifier classes, and responsive breakpoints so layouts adapt fluidly across screen sizes. By starting with a consistent baseline, Blueprint CSS reduces cross-browser quirks and gives designers confidence in spacing, proportion, and element alignment. Teams often use it as the “CSS backbone” of internal tools, web products, or component libraries.

GGredit is library that implements base functionality for a generic graphic editor. DDraw is a diagram editor designed for Gnome that use GGredit. DDraw is inspired to DIA, it can be used to draw many different kinds of diagrams.

jsoop (Javascript Object Oriented Programming) is a cross-browser javascript component library targeting Microsoft Internet Explorer and Mozilla. It's inheritance tree includes basic HTML components, alignment, serialization, fieldbinding, xml, xmlhttp

NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.