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Stochastic parameter sensitivity analysis for chemical networks
SPSens is a complete software package written in C that estimates parameter sensitivities for stochastic models of chemical and biochemical reaction networks using MonteCarlo (MC) stochastic simulations. It is possible to estimate sensitivities with respect to system parameters using the following algorithms: finite difference methods (crude montecarlo, common reaction path, coupled finite differences); likelihood ratio methods; and regularized pathwise derivatives.
Additionally the package includes basic stochastic simulation algorithms. ...
The Tomographic Image Reconstruction Interface of the Universite de Sherbrooke (TIRIUS) is a Qt-based user-interface software for reconstructing 3D images from data generated by real apparatus or generated by the GATE MonteCarlo simulator.