Search Results for "multiple sequence alignment"
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13 projects for "multiple sequence alignment" with 2 filters applied:
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PHP Snowflake
An ID Generator for PHP based on Snowflake Algorithm
...Snowflake is a network service that generates unique ID numbers at high scale with simple guarantees. If you want to generate unique IDs using the snowflake algorithm, you must ensure that sequence numbers generated within the same millisecond on the same node are unique. Based on this requirement, we have created this package which integrates multiple sequence number providers. -
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Plaso
Super timeline all the things
Plaso (Plaso Langar Að Safna Öllu), or "super timeline all the things," is a Python-based engine designed for automatic creation of timelines in digital forensic investigations. It processes various log files and artifacts to generate a chronological sequence of events, aiding analysts in understanding system activities. -
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Practical-RIFE
More practical frame interpolation approach
Practical-RIFE is an open-source video frame interpolation project that improves the usability and visual quality of the RIFE deep learning architecture. It generates intermediate frames between existing video frames to produce smoother motion and higher frame rates. The project provides multiple pretrained models optimized for different content types, including animation and AI-generated video. Users can increase frame rates by two or four times through Python inference scripts. Configurable scaling options help process high-resolution footage while managing GPU memory requirements. Additional scripts support image sequence processing, comparison previews, and experimental video enhancement using SAFA. ... -
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FigCraft
FigCraft: interface design and prototyping
FigCraft is a free, open-source interface design and prototyping application that provides an alternative to Figma for creating user interfaces, interactive prototypes, and design systems. Built entirely in Rust, FigCraft delivers a fast, native design environment with support for vector editing, auto layout, reusable components, and advanced styling tools. Users can create responsive layouts, manage design variables, build component libraries, and develop interactive prototypes with... -
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Task Scheduler
Cooperative multitasking for Arduino, ESPx, STM32, nRF and more
Cooperative multitasking for Arduino, ESPx, STM32 and other microcontrollers. A lightweight implementation of cooperative multitasking (task scheduling). An easier alternative to preemptive programming and frameworks like FreeRTOS. You mostly do not need to worry about pitfalls of concurrent processing (races, deadlocks, livelocks, resource sharing, etc.). The fact of cooperative processing takes care of such issues by design. -
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Underscore.js
JavaScript's utility belt
Underscore.js is a JavaScript utility-library created by Jeremy Ashkenas that provides a broad set of functions for working with arrays, objects, functions, and other data types — essentially a “utility belt” for functional programming in JS. Instead of extending built-in objects or modifying prototypes, Underscore provides its helpers in a single _ namespace, enabling cross-browser support and consistent behaviour across environments. It offers map/filter/reduce, deep-cloning, templating,... -
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Gemi
PCR primers / probes design from multiple & degenerate sequences
Gemi, an automated, fast, and easy-to-use bioinformatics tool with a user-friendly interface to design primers and probes for polymerase chain reaction (PCR). Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large dataset of sequences efficiently. Python source code is available upon request. Milestone:... -
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Markovify
A simple, extensible Markov chain generator
Markovify is an open-source Python library for generating random text using Markov chain models trained on existing writing. It analyzes large text collections to identify word sequences and their statistical relationships. The software uses these patterns to construct new sentences that resemble the vocabulary and structure of the original material. Users can customize the number of preceding words considered during generation to influence coherence and variation. Built-in safeguards reduce... -
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m6811dis
M6811 Code-Seeking Disassembler
The M6811 Code-Seeking Disassembler is a command-line tool that lets you enter known starting vectors for a given code image for the 6811 micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its companion Fuzzy Function Analyzer uses DNA Sequence Alignment Algorithms to locate similar code in multiple binaries, facilitating reverse-engineering. Originally written to analyze code from GM automotive engine controllers, but is useful anywhere a 6811 micro is being used. Version 1.0 was written in Borland Pascal in April 1996, and updated to v1.2 in June 1999. It was later rewritten to C++ in July 1999 through Jan 2000. ... -
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SwiftUI Drawer
A SwiftUI bottom-up controller, like in the Maps app
...It also provides customization options such as alignment, width, and responsive layout adjustments depending on device orientation or screen size. -
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Keypress
A keyboard input capturing utility
Keypress is a JavaScript utility (Apache‑2.0) for defining keyboard combos, sequences, and custom modifiers. Popular in game development and interactive web apps, it supports keydown/keyup, multiple modifiers, sequence combinations, and offers ~9 KB footprint with zero dependencies. -
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SWAPHI-LS: Alignment on Xeon Phi Cluster
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host. -
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NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
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