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...It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.
Approximate Subgraph Matching Algorithm for Dependency Graphs
...This Java implementation implements our ASM algorithm. See README file: https://sourceforge.net/projects/asmalgorithm/files/
If you use our ASM implementation to support academic research, please cite the following paper:
Haibin Liu, Lawrence Hunter, Vlado Keselj, and Karin Verspoor. Approximate Subgraph Matching-based Literature Mining for Biomedical Events and Relations. PLOS ONE, 8:4 e60954, 2013.
Exact Subgraph Matching Algorithm for Dependency Graphs
...This Java implementation implements our ESM algorithm. See README file: https://sourceforge.net/projects/esmalgorithm/files/
If you use our ESM implementation to support academic research, please cite the following paper:
Haibin Liu, Vlado Keselj, and Christian Blouin. Exploring a Subgraph Matching Approach for Extracting Biological Events from Literature. Computational Intelligence, 2013.
cite-effect helps understand, validate and refactor programs through static analysis. After building a database, it reports variable's accesses within call tree(s), in a text format suitable for integration into editors (like jEdit or Emacs).