Search Results for "fastq"
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Showing 3 open source projects for "fastq"
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fastq
Fast, in memory work queue
fastq is a high-performance in-memory work queue for JavaScript and Node.js applications. It runs tasks through a worker function while enforcing a configurable concurrency limit. Both traditional callback workers and Promise-based async workers are supported. Tasks can be added to either the front or back of the queue depending on scheduling needs. -
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Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. ...
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fqpack
FASTQ compression
Provides bitwise, context-based 2nd generation data compression for large FASTQ-based files
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