Search Results for "bayesian"
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Showing 27 open source projects for "bayesian"
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Think Bayes 2
Text and code for the second edition of Think Bayes, by Allen Downey
Think Bayes 2 is the companion repository for the second edition of Allen B. Downey’s introduction to Bayesian statistics. It teaches Bayesian reasoning through computational methods instead of relying mainly on symbolic mathematics. Each chapter is presented as a Jupyter notebook where readers can study the text, run examples, and complete exercises. Separate solution materials help learners check their work and explore alternative approaches. -
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GrowthBook
Open source feature flagging and AB testing platform
...The platform is designed for performance and scale: its SDKs are lightweight, supporting local evaluation to minimize latency, and it integrates deeply with existing data stacks so you can use your warehouse or analytics system as the source of truth. Experimentation in GrowthBook isn’t just toggles; its statistics engine supports advanced techniques like CUPED, Bayesian, and sequential testing, and control group checks so you can confidently measure impact. -
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Meridian
Meridian is an MMM framework
Meridian is a comprehensive, open source marketing mix modeling (MMM) framework developed by Google to help advertisers analyze and optimize the impact of their marketing investments. Built on Bayesian causal inference principles, Meridian enables organizations to evaluate how different marketing channels influence key performance indicators (KPIs) such as revenue or conversions while accounting for external factors like seasonality or economic trends. The framework provides a robust foundation for constructing in-house MMM pipelines capable of handling both national and geo-level data, with built-in support for calibration using experimental data or prior knowledge. ... -
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Nevergrad
A Python toolbox for performing gradient-free optimization
...The library provides an easy interface to define an optimization problem (parameter space, loss function, budget) and then experiment with multiple strategies—evolutionary algorithms, Bayesian optimization, bandit methods, genetic algorithms, etc. Nevergrad supports parallelization, budget scheduling, and multiple cost/resource constraints, allowing it to scale to nontrivial optimization problems. It includes visualization tools and diagnostic metrics to compare strategy performance, track parameter evolution, and detect stagnation. -
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performance
Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
performance is part of the easystats ecosystem and offers model quality assessment tools for R. It computes metrics like R², RMSE, ICC, and conducts diagnostics such as overdispersion, zero‑inflation, convergence, and singularity checks, complementing model workflows with comprehensive evaluation. -
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BayesianOptimization
A Python implementation of global optimization with gaussian processes
BayesianOptimization is a Python library that helps find the maximum (or minimum) of expensive or unknown objective functions using Bayesian optimization. This technique is especially useful for hyperparameter tuning in machine learning, where evaluating the objective function is costly. The library provides an easy-to-use API for defining bounds and optimizing over parameter spaces using probabilistic models like Gaussian Processes. -
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PyMC3
Probabilistic programming in Python
...Fit your model using gradient-based MCMC algorithms like NUTS, using ADVI for fast approximate inference — including minibatch-ADVI for scaling to large datasets, or using Gaussian processes to build Bayesian nonparametric models. PyMC3 includes a comprehensive set of pre-defined statistical distributions that can be used as model building blocks. Sometimes an unknown parameter or variable in a model is not a scalar value or a fixed-length vector, but a function. A Gaussian process (GP) can be used as a prior probability distribution whose support is over the space of continuous functions. ... -
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JAGS is Just Another Gibbs Sampler. It is a program for the statistical analysis of Bayesian hierarchical models by Markov Chain Monte Carlo.
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Pyro
Deep universal probabilistic programming with Python and PyTorch
Pyro is a flexible, universal probabilistic programming language (PPL) built on PyTorch. It allows for expressive deep probabilistic modeling, combining the best of modern deep learning and Bayesian modeling. Pyro is centered on four main principles: Universal, Scalable, Minimal and Flexible. Pyro is universal in that it can represent any computable probability distribution. It scales easily to large datasets with minimal overhead, and has a small yet powerful core of composable abstractions that make it both agile and maintainable. ... -
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Statistical Rethinking 2024
This course teaches data analysis
...It provides updated notebooks, R scripts, and model examples, some streamlined and restructured compared to previous years. The 2024 repo also highlights the transition toward more robust Stan models and integration with newer Bayesian workflow practices, continuing to emphasize accessibility for learners while modernizing the tools. This version is designed for students following the 2024 lecture series, offering the most current set of examples, exercises, and teaching material aligned with the Statistical Rethinking framework. Online, flipped instruction. I will pre-record the lectures each week. ... -
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Habfuzz
A command-line tool for data-driven fuzzy modelling
Input 1 - A training dataset (multiple observations) of up to four variables (predictors) against one (response variable) Input 2 - A test dataset (multiple observations) of the same four variables with unknown response variable Output - Calculation of the response variable for each test observation using fuzzy logic or fuzzy rule-based Bayesian algorithms HABFUZZ is a habitat model, which can be used in ecohydraulic modelling applications for the calculation of the instream habitat suitability in various discharge scenarios in a simulated river reach. It comes with no graphical user interface but it's a one-click tool. Just provide your input and let HABFUZZ provide you the output. ... -
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Neural Tangents
Fast and Easy Infinite Neural Networks in Python
Neural Tangents is a high-level neural network API for specifying complex, hierarchical models at both finite and infinite width, built in Python on top of JAX and XLA. It lets researchers define architectures from familiar building blocks—convolutions, pooling, residual connections, and nonlinearities—and obtain not only the finite network but also the corresponding Gaussian Process (GP) kernel of its infinite-width limit. With a single specification, you can compute NNGP and NTK kernels,... -
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Statistical Rethinking 2023
Statistical Rethinking Course for Jan-Mar 2023
...It continues to provide scripts for lectures and tutorials, while integrating refinements to examples, notation, and computational workflows introduced that year. Compared with 2022, some models are rewritten for clarity, and teaching materials reflect refinements in McElreath’s evolving presentation of Bayesian data analysis. Students following the 2023 lecture videos use this repository as their coding reference. There are 10 weeks of instruction. Links to lecture recordings will appear in this table. Weekly problem sets are assigned on Fridays and due the next Friday, when we discuss the solutions in the weekly online meeting. -
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Statistical Rethinking 2022
Statistical Rethinking course winter 2022
This repository hosts the 2022 version of the Statistical Rethinking course. It contains course materials such as R scripts, notebooks, and worked examples aligned with McElreath’s textbook. The code emphasizes Bayesian data analysis using R, the rethinking package, and Stan models. It includes lecture code files, example datasets, and structured exercises that parallel the topics covered in the lectures (probability, regression, model comparison, Bayesian updating). The repo functions as a direct hands-on reference for students following the 2022 recorded lecture series. ... -
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Kalman and Bayesian Filters in Python
Kalman Filter book using Jupyter Notebook
...Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions. Introductory text for Kalman and Bayesian filters. All code is written in Python, and the book itself is written using Juptyer Notebook so that you can run and modify the code in your browser. What better way to learn? This book teaches you how to solve all sorts of filtering problems. Use many different algorithms, all based on Bayesian probability. In simple terms Bayesian probability determines what is likely to be true based on past information. ... -
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The Neural Process Family
This repository contains notebook implementations
...They can learn distributions over functions from data and efficiently make predictions at new inputs with calibrated uncertainty — making them useful for few-shot learning, Bayesian regression, and meta-learning. Each notebook includes theoretical explanations, key building blocks, and executable code that runs directly in Google Colab, requiring no local setup. Implementations rely only on standard dependencies such as NumPy, TensorFlow, and Matplotlib, and provide visualizations of model performance. -
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DEBay
Deconvolutes qPCR data to estimate cell-type-specific gene expression
DEBay: Deconvolution of Ensemble through Bayes-approach DEBay estimates cell type-specific gene expression by deconvolution of quantitative PCR data of a mixed population. It will be useful in experiments where the segregation of different cell types in a sample is arduous, but the proportion of different cell types in the sample can be measured. DEBay uses the population distribution data and the qPCR data to calculate the relative expression of the target gene in different cell types in... -
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Edward
A probabilistic programming language in TensorFlow
...It is a testbed for fast experimentation and research with probabilistic models, ranging from classical hierarchical models on small data sets to complex deep probabilistic models on large data sets. Edward fuses three fields, Bayesian statistics and machine learning, deep learning, and probabilistic programming. Edward is built on TensorFlow. It enables features such as computational graphs, distributed training, CPU/GPU integration, automatic differentiation, and visualization with TensorBoard. Expectation-Maximization, pseudo-marginal and ABC methods, and message passing algorithms. -
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BATS
Bayesian Adaptive Trial Simulator
A user-friendly, quick simulator for Bayesian Multi-Arm Multi-Stage Trials -
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RStan
RStan, the R interface to Stan
...It is used in research, applied statistics, and modelling workflows where flexibility and rigor in Bayesian methods are required. -
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BayesianCortex
simple algorithm for a realtime interactive visual cortex for painting
...You paint with the mouse into its dreams and it responds by changing what you painted gradually. There will also be an API for using it with other programs as a general high-dimensional space. Each pixel's brightness is its own dimension. Bayesian nodes have exactly 3 childs because that is all thats needed to do NAND in a fuzzy way as Bayes' Rule which is NAND at certain extremes. NAND can be used to create any logical system. In this early version, I'm still working on edge detection and its understanding of the same shapes at different brightnesses. This will be a module of the bigger Human AI Net project and will be used for adding realtime intuitive high dimensional intelligence in audio and visual interactions with the user. -
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Provides a set of tools for processing text, such as text extraction and classification. Classification implementations to be implemented include: Bayesian and Statistical (N-gram).
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An implementation of memory-prediction framework applied for image recognition. Based on Jeff Hawkins' book On Intelligence. It models the high-level hierarchical architecture of human neocortex and uses Bayesian belief revision for making predictions
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A C++ library for Bayesian computation, including a collection of more generally-applicable utilities.
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Group of packages, developed in J2ME, to allow the automated collection of evidences mapped in a Bayesian Network. The packages can work with Bayesian Networks (MSBNx tool) that represent a set of subjects (questions).