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The Xholon project explores: software as systems of linked nodes, organized hierarchically. The Xholon toolkit supports this back-to-basics approach, and demonstrates practical benefits through examples from numerous domains.
BiVeS - Biochemical Model Versioning System BiVeS is a tool based on the XMLDiff algorithm. You can think of it as a kind of SVN for models with biological or chemical background encoded in XML.
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The FBench is the ongoing development of an open-source graphical software tool for embedded automation components and systems based on the IEC 61499 standard. The project originates from the OOONEIDA Workbench pioneered by Dr. James Christensen in 2005.
Metaquokka is a highly configurable xml editor, currently available as Gridsphere portlet. Besides the default format, there is suppoert for ESysXML, a simulation description scheme for a geodynamics framework. Supports Generic Mapping Tools rudimentary.
VeriNeC (Verified Network Configuration) is a network configuration management application. It allows to import configuration, simulate and verify the network and distribute configuration to devices.