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Calculate electronic properties of graphene-like nanoribbons
...The programs uses the tight binding approximation and mean field Hubbard model to predict electronic properties of graphene-like nanoribbons.
See Discussion to ask questions or details
Update: New versions of this program will be known as quantum-honeycomp
Weighted Implementation of Suboptimal Paths (WISP)
UPDATE: LATEST VERSION AT http://git.durrantlab.com//jdurrant/wisp
Allostery can occur by way of subtle cooperation among protein residues (e.g., amino acids) even in the absence of large conformational shifts. Dynamical network analysis has been used to model this cooperation, helping to computationally explain how binding to an allosteric site can impact the behavior of a primary site often many angstroms away.