BioFVM
3-D diffusion solver for biological problems
...BioFVM was first published in:
A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations. Bioinformatics 32(8): 1156-8, 2016.
DOI: 10.1093/bioinformatics/btv730
method paper: http://dx.doi.org/10.1093/bioinformatics/btv730