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UPDATE: LATEST VERSION AT http://git.durrantlab.com//jdurrant/wisp Allostery can occur by way of subtle cooperation among protein residues (e.g., amino acids) even in the absence of large conformational shifts. Dynamical network analysis has been used to model this cooperation, helping to computationally explain how binding to an allosteric site can impact the behavior of a primary site often many angstroms away. Traditionally, computational efforts have focused on the most optimal path...

Artificial Life is a free and open sourced Java framework use to simulate Life. It is a multi-agents framework where each agent runs it is own Thread.

A new simalator for Network-on-Chip which takes advantage of MPI.

A class library written in Objective-C++ for building models of connectionist networks (neural networks). The class-hierarchy is designed to be maximally general and expandable, but also to support specific types of network.

Agent based model of organizations considering the interplay between the formal hierarchical structure and the process network emerging while the organization performs a task-set.