Showing 710 open source projects for "user"

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  • 1

    Kinetic Model Builder

    GUI for building, simulating and optimizing kinetic models.

    A 3D graphical interface for building, simulating and optimizing Markov kinetic models in response to user defined time dependent stimuli. Models can be represented as either states and connecting transitions or interacting allosteric elements (see http://dx.doi.org/10.1085/jgp.201411183). Model parameters can be optimized by fitting model responses to user data. Optional user defined constraint equations for model parameters are parsed with EigenLab (https://github.com/marcel-goldschen-ohm/EigenLab). ...
    Downloads: 1 This Week
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  • 2

    SoftIB Serial Communicator

    UART communications with data flow monitoring

    A simple to use serial communication software for communicating with other serial, MCU and Arduino. The SoftIB Serial Communicator communicates with other Serial devices that use a simple asynchronous communication using only the RX and TX signals without any control signals. The application was developed based on the communication with microcontrollers, but it can be used in all other cases.
    Downloads: 0 This Week
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  • 3
    RoadRunner represents a state-of-the-art simulation library for SBML models. It is fast, portable and accurate. This projects hosts the library and tools using the library.
    Downloads: 0 This Week
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  • 4
    Analog Insydes is a Mathematica toolbox for symbolic analysis of analog electronic circuits. This project provides a set of free add-ons to Analog Insydes, including a Java front-end and a native netlister for Cadence's Analog Design Environment (ADE).
    Downloads: 0 This Week
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  • 5

    Simple Python Fixed-Point Module

    Pure-python binary fixed-point arithmetic library

    This Python module provides basic facilities for mathematics on fixed-point numbers. The number of fractional binary digits is tunable, allowing near-arbitrary precision arithmetic. Arithmetic & functions such as sqrt, exp, log, sin & cos are available. For the latest releases please visit https://github.com/rwpenney/spfpm
    Downloads: 0 This Week
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  • 6
    AcouSTO
    AcouSTO (Acoustic Simulation TOol) is a low-order BEM code to solve the Kirchhoff Integral Equation. An arbitrary number of scattering/radiating bodies, monopoles, and plane waves is allowed. Runs in parallel on MPI2-equipped clusters.
    Downloads: 0 This Week
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  • 7
    JBioFramework

    JBioFramework

    Growing suite of proteomics simulations for educational purposes

    ...It is written in the Java programming language and will run on any and all systems that have the JVM installed. As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please don't hesitate to review the software below or email Paul Craig [pac8612@rit.edu] with larger descriptions/bugs/feature ideas. Our next scheduled release will contain (in addition to 2DE and MassSpec) a 1D Electrophoresis simulation as well as a tab containing ChemAxon's MarvinSketch [http://www.chemaxon.com/products/marvin/] along with some improved functionality. ...
    Downloads: 1 This Week
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  • 8
    MetaMIS

    MetaMIS

    Metagenomic Microbial Interaction Simulator

    MetaMIS is the first tool to automatically infer the microbial interactions of microbial community profile in the field of metagenomics. The most distinguished feature of MetaMIS is its ability to retain maximum population of rare species in an ecological interactive network. MetaMIS provides a user-friendly interactive stand-alone graphical interface for scientists without programming skills to investigate the interactions among microorganisms. 2017.03.09 MetaMIS_v1.02: - Create an option to export consensus table. - Decimal time is allowed. 2016.12.16 MetaMIS_v1.01: - fix the memory-out problem for larger abundance table (>500 OTUs)...
    Downloads: 0 This Week
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  • 9
    A modeling and simulation tool for Routing problems on Graphs, tccrouter is a java desktop application that provides a 2d map for building graphs and simulating a variety of real world routing solutions: Shortest path, TSP, VRP, VRP-TW. Check Git repository. https://github.com/guilhebl/routerapp
    Downloads: 0 This Week
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  • 10
    SANGOMA
    Development of new data assimilation techniques for ocean models
    Downloads: 0 This Week
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  • 11

    Ulambator

    boundary element based flow solver for microfluidics

    ...Hence the flow solver is well adapted to free interface flows in shallow geometries. The manual and tutorial codes are still being extended. New functions will be made available. For more user information please check http://lfmi.epfl.ch/ulambator
    Downloads: 0 This Week
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  • 12

    Virtual Cell

    Former home of the Virtual Cell platform (VCell), see http://vcell.org

    This project and all source code has moved to GitHub, see https://github.com/virtualcell
    Downloads: 0 This Week
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  • 13
    SystemC-WMS
    SystemC-WMS (Wave Mixed Signal Simulator) is a class library that extends the standard SystemC kernel to allow modeling and simulation of complex systems comprising analog parts from heterogeneous domain (electrical, mechanical, thermal, ...).
    Downloads: 0 This Week
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  • 14

    SAJaS

    Simple API for JADE-based Simulations

    The Simple API for JADE-based Simulations (SAJaS) is a proposal to bridge the gap between MAS simulation and development. SAJaS enhances MABS frameworks with JADE-based features. While empowering MABS modellers with modelling concepts offered by JADE, SAJaS also promotes a quicker development of simulation models for JADE programmers. In fact, the same implementation can, with minor changes, be used as a large scale simulation or as a distributed JADE system. SAJaS provides, for certain...
    Downloads: 0 This Week
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  • 15
    Repast

    Repast

    The Repast Suite is a family of free agent-based modeling libraries.

    The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have been under continuous development for over 20 years. Current source code and releases are hosted on Github https://repast.github.io/
    Downloads: 1 This Week
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  • 16
    TM Sim

    TM Sim

    Ein Simulator für Turingmaschinen

    Im Simulator können Turingmaschinenprogramme in Tabellenform geschrieben, gespeichert und ausgedruckt werden.
    Downloads: 0 This Week
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  • 17
    RM Sim

    RM Sim

    Ein Simulator für Registermaschinen

    Im Simulator können Registermaschinenprogramm geschrieben, gespeichert und ausgedruckt werden. Der Simulator akzeptiert Registernamen, relative Sprünge und Sprünge zu Labels.
    Downloads: 0 This Week
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  • 18
    MoRe4ABM

    MoRe4ABM

    Managing Ongoing RElationships for Agent-Based Modelling

    The purpose of MoRe4ABM - Managing Ongoing RElationships for ABM - is to support representing and analysing social networks in agent-based modeling. The library provides a large number of network generators and a comprehensive framework for network and node level measures. It integrates well with Repast Simphony and uses the JUNG library. More4ABM furthermore supports initialisation of geographically explicit networks using GIS.
    Downloads: 0 This Week
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  • 19
    Libre Mechanics

    Libre Mechanics

    Open Knowledge on engineering development.

    Libre Mechanics it’s an Open Knowledge project created to offer a useful platform of information related with the development and research of Mechanical Engineering themes and similar fields, higly related with the use of Open Source and Software Libre tools. Here you will find a wide variety of projects, publications and scientific material available as references for developing their own projects, also guides and tutorials that allow you to take advantage of free software tools available...
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    Downloads: 29 This Week
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  • 20
    Gimias

    Gimias

    Graphical Interface for Medical Image Analysis and Simulation

    GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.
    Downloads: 0 This Week
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  • 21

    CRAFTY

    Competition for Resources between Agent Functional Types

    CRAFTY is a large-scale ABM of land use change. It has been designed to allow efficient but powerful simulation of a wide range of land uses and the goods and services they produce. It is fully open-source and can be used without the need for any programming.
    Downloads: 0 This Week
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  • 22
    pySimiam

    pySimiam

    Robot simulator inspired by Sim.I.Am

    PySimiam is a robot simulator, created to follow the course "Control of Mobile Robots" offered at Coursera. The simulator models an arbitrary number of mobile robots in a 2D environment, each controlled by a arbitrary algorithm.
    Downloads: 0 This Week
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  • 23

    YASIM Commander

    YASimCommander is a platform-independent editor for YASIM files.

    YASim Commander is a platform-independent, open source editor for creating and editing YASim aircraft models in Flightgear.
    Downloads: 0 This Week
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  • 24
    LOOS

    LOOS

    Analyze molecular simulation data

    LOOS is a light-weight object oriented software library for creating new tools for analyzing molecular simulation data, written in C++. The main design goal is to allow casual programmers to easily implement new analysis methods. THIS PAGE IS NO LONGER UPDATED. Please see https://github.com/GrossfieldLab/loos for all recent developments
    Downloads: 0 This Week
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  • 25
    EVERT is an acoustic beam-tracing library. It is optimized for a moving listener with static geometry and sound source. It computes all the visible specular reflection paths up to the given reflection order.
    Downloads: 0 This Week
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