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We experiment with Evolution of Artifical Neural Networks, combining the two fields of Evolutionary Computation and ANNs. Our methods are applied to a variety of interesting problems. To learn more, click on "Home Page", "Mail", or "Files".
Jef-X willl come to be a very usefull platform independent tool to help enginers to calculate 3D spatial porch using springs, bars and frames (the finite elements). It uses JavaScript and XML to build and run structure objects.
Digital graph 1.3 is an advanced JAVA SWING component for modelling, displaying, saving and loading graphs(using XML and XMLSchema). It is fully documented and requires jdk 1.5.x.Version 1.3 adds 9 bug fixs, 3 rengineering and 4 new features.
A collection of modules and enduser tools designed to help design, test and use system models. While my research (hence, the examples) is focused on hydro-ecological systems, the program can be used on any system characterized by ODEs (and soon PDEs?)
SPICES, in full name Standard Programmable Identifiers for Calculator Enumeration
and Storage, is a set of coding standard for expressing, transferring and
storing calculator programs effectively.
runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and conditions.
SimED is a user-friendly Differential Equation simulation software. It can integrate numerically ODEs (Ordinary Differential Equations) using several methods, plot time and phase-space diagrams for variables, and interactively choose initial conditions.
FEVal, the Finite Element Evaluator written in Python, provides easy conversion for many Finite Element data formats (both binary and ascii). Mesh modification is very easy. Values of model results can be accessed given coordinates in physical space.
Simulator for large neuronal networks using leaky INF as its basic element. Simple few line scripts will enable rapid creation of large networks with different connectivities. Aimed at researchers interested in quickly testing large networks of neurons.
A Java-based mesoscopic, intermodal traffic simulator (MITS), providing a tool to evaluate scenarios (consisting of a road/rail/waterway network topology and load allocation) in terms of throughput, average speeds/travel times, congestion prediction.
SimForge is a web-based Agent Based Model of an Open Source Ecosystem implemented in Python with Django. Developers act on randomly drawn preferences to create, collaborate, and use software.
CodeBot is a java (swing) based application that allows to generate keyboard and mouse events, by using simple scripting configuration. Bot allows to start and manage scripts in new threads. Can be used to write game bots or mouse/keyb simulations.
VeriNeC (Verified Network Configuration) is a network configuration management application. It allows to import configuration, simulate and verify the network and distribute configuration to devices.
aVolve is an evolutionary/genetic algorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Genetic algorithm, but does include a primitive genetic algorithm written in Python.
Opensource, webbased Stock analysis with support for AI algorithms and simulation. Current development state is very early and only supports viewing of stock quotes at the moment.
PyAero is a toolkit developped at andheo for CFD software :
post-processing, curve generation, …
Currently PyAero focuses on ONERA's code "Cedre".
PyAero is powered by Qt, Python, PySide, enthought and pyLot.
Freeode is a compiler for the SIML programming language. It is a specialized language to solve differential equations. The compiler creates a python program that uses Numpy and Scipy to do the numerical computations.
Python program devoted to study the relationship between cells during inmune response. It is based on a 3D periodic boundary conditions grid where cells see each other and react according to certain movement, growth and interaction rules.