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ShoX is a scalable simulator for wireless networks written in Java. It is easy to install, configure and use, so that reliable and expressive scientific results can be gathered in a short time. Documentation: http://sourceforge.net/apps/mediawiki/shox
ParallelSim is a parallel processor simulator written in java.
...The output of simulation will vary from machine to machine depending upon the underlying hardware, for e.g., the timings will be different on a dual core and a quad core processor. Feel free to reach out to me if you have any suggestions or queries.
Cervelletto is a neural network simulator. It uses a new neural model based on biological, neurological and psychological studies. [it's not yet completed... just give me some weeks! sorry!]