Showing 16 open source projects for "genetic algorithm simulation toolbox"

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  • 1

    Genetic algorithm for EOM

    A python GA code for EOM in SAXS/WAXS

    Because GAjoe of ATSAS cannot deal with WAXS range, and no parameters can be modified. I made a code by myself to use GA for finding best EOM for SAXS/WAXS. The project need ATSAS crysol and a folder with multiple pdb files to use.
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  • 2

    GenCodeGenerator

    C++ class to generate biologically plausible genetic codes

    The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates...
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  • 3

    gametes

    Generate complex SNP models and heterogeneous datasets

    Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. User friendly GAMETES software...
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  • 4
    ESTReMo

    ESTReMo

    An evolutionary simulator of transcription regulatory networks

    ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds.
    Downloads: 0 This Week
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  • 5

    Java Evolutionary Computation Library

    As of 2012-12-18, this project may now be found at Google Code.

    As of 2012-12-18, this project may now be found at http://http://code.google.com/p/paba JECO is a Evolutionary Computation Library deveoloped in Java. It includes a variety of evolutionary optimization techniques such as genetic algorithm, genetic programming, evolutionary mapping methods, particle swarm optimization, ant colonies, etc.
    Downloads: 0 This Week
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  • 6
    A genetic algorithm in Python for evolving programs that write a given string to an allocated dataspace, using a made-up machine language with only 7 instructions and flow reversal.
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  • 7
    This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress
    Downloads: 1 This Week
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  • 8
    This easy to run and change program for developers, it contains several evolutionary based strategies allowing you try among some function samples
    Downloads: 0 This Week
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  • 9
    PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.
    Downloads: 0 This Week
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  • 10
    A 2D rigid physics simulator and set of genetic algorithm tools. Evolve cute little walking creatures.
    Downloads: 0 This Week
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  • 11
    The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A genetic algorithm and Markov simulations are currently implemented.
    Downloads: 0 This Week
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  • 12
    A framework for utilising the Genetic Algorithm in the domain of Game Theory
    Downloads: 0 This Week
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  • 13
    Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
    Downloads: 0 This Week
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  • 14
    aVolve is an evolutionary/genetic algorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Genetic algorithm, but does include a primitive genetic algorithm written in Python.
    Downloads: 0 This Week
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  • 15
    GAZES - Genetic Algorithm Zombie Eradication Simulation Grid-based simulator for zombie scenario. The units will use genetic algorithm to determine their actions on a cycle by cycle basis. This is a school project, so is likely on hiatus for summer.
    Downloads: 0 This Week
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  • 16
    Profiled Endwall Design

    Profiled Endwall Design

    A genetic algoritm based system for generating profiled endwalls.

    This code is based on the Durham Endwall Design System used to produce endwall designs for low speed linear cascades. It consists of a number of Octave scripts which run mesh generators and flow solvers and uses a genetic algorithm to find the optimal solution.
    Downloads: 0 This Week
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