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    JBioFramework

    JBioFramework

    Growing suite of proteomics simulations for educational purposes

    JBioFramework (JBF) is a set of two different chemical separations simulations (2D Electrophoresis and Mass Spectrometry) that are frequently used in chemistry, biochemistry and proteomics research. It is written in the Java programming language and will run on any and all systems that have the JVM installed. As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please don't hesitate to review the software below or email Paul Craig [pac8612@rit.edu] with larger descriptions/bugs/feature ideas. Our next scheduled release will contain (in addition to 2DE and MassSpec) a 1D Electrophoresis simulation as well as a tab containing ChemAxon's MarvinSketch [http://www.chemaxon.com/products/marvin/] along with some improved functionality. ...
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    ns-2 Trace Toolkit

    ns-2 Trace Toolkit

    This toolkit allows you to analyze and validate ns-2 traces

    ...These histograms can give hits about concentration of nodes. Additionally, the tool allows users to simulate the movement of the nodes, in different modes: step-by-step and continue motion. During the simulation, the information of each node (speed and position) is shown. Finally, basic manipulation of trace files are also available in the tool. For example, users can generate a new trace file that contains the movements of a selection of nodes, or shift the positions of nodes toward the origin.
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