Showing 160 open source projects for "bio-bwa"

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  • 1
    Cell Electrophysiology Simulation Environment (CESE)
    Downloads: 0 This Week
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  • 2
    Mito-MAS-m is a simulator of the mitochondrial inner membrane and the enzymatic complexes embedded in it, implementing a coarse-grained (CG) model of the molecules using rigid structures and Dissipative Particules Dynamics (DPD) as motion equation.
    Downloads: 0 This Week
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  • 3
    SpiNet is a neural simulation tool for large spiking networks with highly heterogeneous synapses. Neurons are modelled as I&F units with dual exponential synaptic conductances. Complex network models can be easily built using the included tool NetBuilder
    Downloads: 0 This Week
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  • 4
    Neurofitter is a parameter tuning package for electrophysiological neuron models. For more information please take a look at http://neurofitter.sourceforge.net
    Downloads: 0 This Week
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  • 5
    This software enable cannabis grower to manage and retrieve statistics about culture, tools included have the goal to help growing indoor cannabis.
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    Downloads: 2 This Week
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  • 6
    This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).
    Downloads: 0 This Week
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  • 7
    Phage Therapy Simulation-Discrete Events

    Phage Therapy Simulation-Discrete Events

    Discrete event model simulating bacteria and bacteriophage

    Moved to: http://parkermills.github.io/phagetherapy/
    Downloads: 0 This Week
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  • 8
    JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.
    Downloads: 0 This Week
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  • 9
    AgentCell is an agent-based model of cellular biochemical processes and biological behavior.
    Downloads: 0 This Week
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  • 10
    3D cellular automata modelling software for large general purpose simulations. Uses custom scripts for rules and can distribute processing over several machines.
    Downloads: 0 This Week
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  • 11
    A platform for the integration of deterministic and stochastic models, for the simulation of the integrated models and for interactive exploration of the model behaviour.
    Downloads: 0 This Week
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  • 12
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 0 This Week
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  • 13
    Create and simulate Hybrid Petri Nets.
    Downloads: 4 This Week
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  • 14
    Fast-DCM (Fast-DynamicCausalModelling) is an open-source addon for the SPM5 toolbox (http://www.fil.ion.ucl.ac.uk/spm/software/spm5/). It accelerates the estimation of Dynamic Causal Models.
    Downloads: 0 This Week
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  • 15
    Experimental Lindenmayer System generator, in 3D using OpenGL. Used for modeling the fractal growth processes of plants.
    Downloads: 0 This Week
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  • 16
    OOPS means Open Protein Simulator, it is a program designed to serve as a test bed for different algorithms for protein folding, dynamics and structure prediction. OOPS is based on a plugin architecture that makes it highly modular and extensible.
    Downloads: 0 This Week
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  • 17
    Narrator is a graphical modelling tool for the description of dynamical systems and processes. Narrator is SBML compatible.
    Downloads: 0 This Week
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  • 18
    GridSweeper makes it easy to perform batch runs of scientific simulation programs on computational grids/distributed resource management systems.
    Downloads: 0 This Week
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  • 19
    Cellogica is a cellular logic analysis tool. It incorporates sequential logic and finite state machine to elucidate the relationship between transcription factors and corresponding gene expression.
    Downloads: 0 This Week
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  • 20
    Simulator of virtual animals made up of biological neural networks for research in the Computational Neuroscience field.
    Downloads: 0 This Week
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  • 21
    Our goal is to create an open source framework and toolset for modeling dynamic cellular network functions, and to develop a user community committed to using, extending and exploiting these tools to further our knowledge of biologic processes.
    Downloads: 2 This Week
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  • 22
    Cellular Automata simulator. Native code (fast) and modular design: update rule, topology, time, measurement, initialization are independant. No GUI (for now...): configuration file (commented default automatically generated) overridable by command line.
    Downloads: 0 This Week
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  • 23
    The Neural Assembly Simulation Environment (NASE) is a collection of routines written in the Interactive Data Language (IDL) by Research Systems Inc. It provides routines to simulate neural networks and to visualize those networks' behavior.
    Downloads: 0 This Week
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  • 24
    Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
    Downloads: 0 This Week
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  • 25
    Plotamber is a Perl script for an easy and automated plotting of properties derived from molecular dynamics or minimization calculations done with Amber, NAMD or Charmm.
    Downloads: 0 This Week
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