Search Results for "python::module" - Page 5
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Showing 359 open source projects for "python::module"
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Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
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FAST Simulations
An Open source Analysis and SImulation Toolbox for Fuel Cells
FAST is an Analysis and Simulation Toolbox (FAST) for Fuel Cells (FC) FAST-FC is the doctorate work of David B. Harvey and was developed with support from the U.S. DOE, Ballard, and Queen's University. Derivative works of FAST-FC include FC-APOLLO which is a forked branch of this project intended to capture the code state at the exit of the funded DOE project. FAST-FC is the open and active community branch. FAST-FC is developed and maintained by the original creator and... -
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Moose
Multiscale Neuroscience and Systems Biology Simulator
Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code. -
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pyMDMix
Molecular dynamics with aqueous-organic solvent mixtures
This python package aims to help people set up and analyze molecular dynamics simulations in aqueous-organic solvent mixtures. See D. Alvarez-Garcia et al. Journal of Medicinal Chemistry, 2014. -
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OptFerm
A computational platform to study fermentation processes
...This tool is focused in optimizing a feeding trajectory to be fed into a fed-batch bioreactor and to calculate the best concentration of nutrients to initiate the fermentation. Also, contains a module for the estimation of kinetic and yield parameters, allowing the use of experimental data obtained from batch or fed-batch fermentations to reach the best possible model setup. -
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Analysis software for Nbody/SPH or SPH simulations (e.g. performed with Gadget II). See http://sourceforge.net/apps/wordpress/hyplot/about and http://sourceforge.net/apps/trac/hyplot/wiki for more information.
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FFSM++
French Forest Sector Model
Given the importance of anthropogenic determinants in forest ecosystems within Europe, the objective of the FFSM++ model is to link the evidence arising from biological models with socio-economic determinants, where the expected returns of forest investments represent the main drivers. An (inventory-based) forest dynamic model is hence coupled with a (partial equilibrium) market module and a (micro-based) management one in a national level forest sector model for France (FFSM++). The model is fully open source (GPL3) with the sole exception that if you publish some document based on a modified version of FFSM++ you need to publish also the modifications you made. -
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STARucn
Monte-Carlo simulation for ultra-cold neutrons
STARucn (Simulation of Transmission, Absorption and Reflection of ultracold neutrons) is a Monte-Carlo software designed to simulate experimental setups and guides for ultra cold neutrons. It relies heavily on CERN's ROOT packages. Developing team : Benoit Clément, LPSC/UJF Damien Roulier, ILL/UJF -
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StochPy - Stochastistic modeling in Python - is an easy-to-use package, which provides several stochastic simulation algorithms and unique analysis techniques, which can be used for stochastic simulations of biochemical systems.
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DEVSIM
TCAD Device Simulator
TCAD Device Simulator. DEVSIM is a semiconductor device simulation software, using the finite volume method. This software solves partial differential equations on a mesh. The Python interface allows the user to specify their own equations. -
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...The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1.
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This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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That project aims at providing a clean API and a simple implementation, as a C++ library, of a Travel-oriented fare engine. It corresponds to the simulated version of the real-world Fare Quote System.
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That project aims at providing a clean API and a simple implementation, as a C++ library, of a Travel-oriented Distribution System. It corresponds to the simulated version of the real-world Computerized Reservation Systems (CRS).
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Travel Market Simulator
Travel Market Simulator
That project aims at studying the impact of IT systems interactions on traveller demand and airline revenues. Passenger demand is generated (Monte Carlo) and injected into simulated CRS and airline IT systems. Differential analysis is then performed on various changes compared to a bottom line scenario. -
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That project aims at providing a clean API and a simple implementation, as a C++ library, of an Airline-related Inventory Management system. That library uses the Standard Airline IT C++ object model (http://sf.net/projects/stdair).
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That project aims at delivering a reference implementation of a library, estimating and serving average prices paid for air travel products. It is not intended for use by an actual airline, but rather by simulators or other airline-related modules of
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**(9 march 2016) this project is continued on github : http://jaapkroe.github.io/polypy ** Python script to analyze (shortest-path) rings in structures read from xyz-files. It can be useful for example to identify defects in crystal structures or molecules.
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KEMP
A FDTD solver for electromagnetic wave simulations on a GPU cluster
...The FDTD (Finite-Difference Time-Domain) method is a popular numerical method for electromagnetic field simulations. KEMP enables hardware accelerations suitable for multi-GPU, multi-core CPU and GPU cluster. KEMP also provide easy configuration by using Python scripting language. -
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BlueSky Open Air Traffic Simulator
BlueSky Open Air Traffic sim, (Windows/Linux/Mac, Python 2.x based)
BlueSky is an Open Air Traffic Simulation for research purposes. It includes only open, license free data for navigation and aircraft performance but is also compatible with BADA 3. Can be used for ATC research or any other aviation or air transport related simulation studies. Is also able to visualize ADS-B traffic. BlueSky commands, and thus the scenario files, are compatible with the TMX simulator in use by NLR and NASA. BlueSky is originally developed, and still moderated, by prof.... -
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sfunctioner is a GUI wizard written in PyQt for creating Matlab Simulink sfunctions quickly and efficiently. It helps creating a fully functional sfunction within a few minutes.
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LipidWrapper
Create lipid-bilayer models of arbitrary geometry.
LATEST VERSION NOW LOCATED AT http://git.durrantlab.com/jdurrant/lipidwrapper As ever larger and more complex biological systems are modeled in silico, approximating physiological lipid bilayers with simple planar models becomes increasingly unrealistic. When building large-scale models of whole subcellular environments, models of lipid membranes with carefully considered, biologically relevant curvature are essential. LipidWrapper, written by Jacob Durrant in the lab of Rommie E. Amaro,...