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QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
Wavefront is a programme for simulating 2D acoustic systems, with a particular emphasis on determining wavefront shapes at the mouths of horns.
It accepts CAD drawings in DXF format and produces animated displays of wave propagation as well as exporting various data as text files.
It is GPL software and runns on Linux and Windows.
Power/Energy simulation in SystemC. Powersim is a SystemC class library aimed to the calculation of power and energy consumption of hardware described at system level. To this end C++ operators are monitored and different energy models can be used for each data type. Powersim does not require any change in the application source code.
Current version is 0.3.0.
TRMSim-WSN (Trust and Reputation Models Simulator for Wireless Sensor Networks) is a Java-based simulator aimed to test Trust and Reputation models for WSNs. It provides several Trust and Reputation models and new ones can be easily added.
SystemVerilog module to substitute Verilog PLA system tasks.
SystemVerilog module that models the following PLA system tasks of Verilog: $a/sync$and$array $a/sync$nand$array $a/sync$or$array $a/sync$nor$array $a/sync$and$plane $a/sync$nand$plane $a/sync$or$plane $a/sync$nor$plane.
A language and a compiler for the solution of differential equations (ODE). Both lumped and distributed variables (PDE) will be possible. The ability to solve DAEs is a long term goal. The compiler generates a Python program that does the computation.
The goal of this project is to provide a platform for simulating biological aging and evolution of the population. The simulation is done using Penna bit-string model. Its based on the mutation accumulation theory.
rmachine is a register machine simulator (the complexity theory version), programmed in python, complete with a module to be used in your programs and a (PyQt4) GUI.
SMMP (Simple Molecular Mechanics for Proteins) is a program library for protein simulations with an emphasis on advanced Monte Carlo algorithms. It includes various force fields to calculate the energy of a protein and protein-protein interactions.
A sleep research experiment manager, EDF (EEG, EMG etc) with power spectrum analysis and visualisation, and Process S ('sleep pressure') estimation following Achermann et al (1993).
NetLogo is a software platform for agent-based modelling. Here we present an R extension of NetLogo. It adds new NetLogo primitives New locations: R-Extension: http://r-ext.sourceforge.net Rserve-Extension: http://rserve-ext.sourceforge.net
TuringIDE is an integrated development environment (IDE) for simulating Turing Machines with multiple tapes and states. It offers debugging tools, XML import/export, and other advanced features for scientific experiments on formal symbol allocations.
DIFFR is a menu-driven graphical software whereby the problem of a plane wave diffraction on a rough surface can be solved using several numerical and approximate methods.
Arena is a computer simulation in which programs compete for CPU time and access to main memory. Processes such as the dynamics of punctuated equilibrium, host-parasite co-evolution and density dependent natural selection are amenable to investigation.
representation by relations vs data storage. pile unifies the contradicted qualities of tables/trees (databases) and complex networks, order and flexibility. dynamical data generation on call. fast. natively compressing similarities. search across scopes.
CUDA accelerated spherical model forward solution for EEG/MEG
CUDA-SPHERE-FWD-MEEG is a CUDA C based toolkit which provides a GPU based implementation of the spherical model forward solution for the 306 channel Elekta Neuromag MEG system and the EEG. The 1-Sphere forward solution for the MEG and the 4-Sphere forward solution for the EEG is implemented in CUDA C and an accelerated solution is obtained using the NVIDIA GPU when the solution is calculated for a large number of dipoles (on the order of 15000 and above) and sensor locations. Speedup by a...