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ControlSystems.jl is a Julia toolbox for control systems design and analysis, offering models in transfer-function and state-space representations, enabling construction of complex systems, simulation in time and frequency domains, and performance/stability evaluation. This toolbox works similar to that of other major computer-aided control systems design (CACSD) toolboxes.
This is a sophisticated & integrated simulation and analysis environment for dynamicalsystems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
approximate Bayesian computation for stochastic differential equations
A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models.
It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated.
BRAHMS is a Modular Execution Framework for dynamicalsystems. It knits together independently-authored software modules implementing dynamical processes into an integrated system, and supervises the deployment and execution of that system.
SystemML is an XML format for exchange of mathematical systems for numerical simulation. This toolbox offers support for the SystemML infrastructure. It is included in the distributions of SystemML execution clients, but can be installed separately.
...Nevertheless the toolbox capabilities to simulate numerical solutions of SDE systems are still valid and can serve as a useful starting point to those willing to simulate stochastic dynamical models easily.
SB:M/O is a cross-platform toolbox for systems biology. It fully supports both Matlab and the open source alternative, Octave. The aim is to make it easy for the systems biology community to develop new, portable systems biology solutions.