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MEMBPLUGIN is a membrane analysis tool for molecular-dynamics simulations. It is a collection of visual and command-linetools that can be run within the Visual Molecular Dynamics (VMD) environment to analyze biomolecular simulations of lipid bilayers.
xswifs stands for: cross SoftWare Interfaces.
This project provide examples (snippets) for interfacing various software tools and languages with various mechanism. It has been created to help in HW/SW co-simulation and to provide benchmarks.
netcdf-tools is a set of tools for creating netCDF files. It supports commandline use on both Windows and Unix as well as use directly as a Java library. Written by CSIRO Australia and funded by the ANDS Australian Research Data Commons Project
The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network.
Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!
XML based parsers and translation tools for electronic design automation (EDA). Tools for manipulating netlist formats (e.g. SPICE, Spectre, CDL), languages (e.g. Verilog-AMS, VHDL-AMS, ASM), and other useful text-based formats (e.g. Liberty, Gerber).
A family of programs for building coarse-grained models (eg. of macromolecules), manipulating them (geometrical transformations and more) and calculating their X-ray scattering patterns (1D and 2D too). Uses PVM for parallelization.
libit provides easy to use yet efficient tools for C for signal processing, coding, or scientific code in general. It includes basic vector, matrix and function types, some common source and channel coding tools such as quantization, entropy coding, etc.
Curve Captor is a free (distributed under GPL) vacuum tube modeling software that brings the advantages of modern computer simulation tools to design of vacuum tube electronics.
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