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Growing suite of proteomics simulations for educational purposes
JBioFramework (JBF) is a set of two different chemical separations simulations (2D Electrophoresis and Mass Spectrometry) that are frequently used in chemistry, biochemistry and proteomics research. It is written in the Java programminglanguage and will run on any and all systems that have the JVM installed.
As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please don't hesitate to review the software below or email Paul Craig [pac8612@rit.edu] with larger descriptions/bugs/feature ideas.
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XPSEDAPI is a cross-platform (programminglanguage agnostic) definition of an application programming interface for working with and manipulating SED-ML documents. Interfaces are defined in Interface Definition Language (IDL) with full documentation.
General purpose discrete event simulation (DES) framework for the Python programminglanguage. Khronos gathers ideas from other simulation software and tries to provide a simple and poweful toolset for simulation of discrete systems.
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MCS is a tool that exploits the Monte Carlo method and, with a complex algorithm based on the PERT (Program Evaluation and Review Technique), it estimates a project's time.
MCS is a opensource project and it was devolped by Java ProgrammingLanguage.
ComLinC (a COMmunications Library IN C programminglanguage), a C library for communications research and simulation. It's based on GSL. ComLinC aims at providing elegent, fast functionality to the frequently encountered problems in communications area.
JSim8086 is platform-independent Assembly Language Simulator of the Intel 8086 CPU. It was designed to be a learning tool (CAL) for first year Computing students who are learning Computer Systems Organisation and Assembly Programming.
METIL is a python-like interpreted or compiled language made for speed and generic programming, as in C++ but with static symbolic computations, type propagation, "for" surdefinition. Object orientation is centered on properties, rather than hierarchy.
JCPUSim is a CPU (Central Processing Unit) simulator written in Java. It is intended to aid in teaching how the fetch-decode-execute cycle, CPU, registers, memory and assembly programminglanguage work in a computer system.
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YABI93 is an Interpreter for the esoteric programminglanguage Befunge, version "Befunge93". It is written in Java 1.5 and uses Swing for its graphical interface. YABI supports a multilanguage GUI.
Freeode is a compiler for the SIML programminglanguage. It is a specialized language to solve differential equations. The compiler creates a python program that uses Numpy and Scipy to do the numerical computations.