Search Results for "cite"
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Showing 7 open source projects for "cite"
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Matrix Product State (MPS) Simulations
Numerical routines for variational matrix product state simulations.
...We offer various time evolution methods with an emphasis on the support of long-range interactions through the matrix product state formalism. For more algorithms, see the list of features below. Please cite "M. L. Wall and L. D. Carr, New J. Phys. 14, 125015 (2012)" and "D. Jaschke, M. L. Wall, and L. D. Carr, Computer Physics Communications 225, 59–91 (2018)" if your publication involves OSMPS. -
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KMC-KaiC
Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock
...This makes it possible to run the model at thermodynamic equilibrium. This version of the model can be downloaded under KMC_KaiC_Rev.zip. If you like to use our model for your own research, please cite our PLoS Computational Biology paper. -
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.... _______________________________________ Please have also a look on our info page about other NetLogo extensions at http://www.uni-goettingen.de/en/315075.html. _______________________________________ Please cite this software in scientific publications as: Thiele, JC; Grimm, V (2010). NetLogo meets R: Linking agent-based models with a toolbox for their analysis. Environmental Modelling and Software, Volume 25, Issue 8: 972 - 974
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igafem
Open source 3D Matlab Isogeometric Analysis Code
...The work is funded under the FP7 Initial Training Network Funding under grant number 289361 'Integrating Numerical Simulation and Geometric Design Technology.' If you use this code or inspired by it please cite the following reference in your work: VP Nguyen, C Anitescu, S Bordas, T Rabczuk. "Isogeometric analysis: an overview and computer implementation aspects". Mathematics and Computers in Simulation, (2015), pp. 89-116, Vol 117. -
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piv_clustering
structural clustering of atomic trajectories based on PIV
...The output is a partitioning of the trajectory into a few structural clusters (i.e., sets of frames), allowing for simpler analysis and visualization. Please read and cite Gallet & Pietrucci, J. Chem. Phys. 139, 074101 (2013) -
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MIST
A MATLAB toolbox to simulate optical systems
...This tool is being developed mainly for simulation of large scale interferometers with resonant cavities used for the detection of gravitational waves. Subscribe to the mailing list for updates and news. If you use MIST in your own simulation work, please cite is as G. Vajente, "Fast modal simulation of paraxial optical systems: the MIST open source toolbox" Classical and Quantum Gravity 30, 075014 (2013) -
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birgHPC is a Linux Live CD distribution based on PelicanHPC and Debian Live. birgHPC features automated cluster configuration on PCs in the same network specifically for bioinformatics and molecular dynamics. If you are looking for CUDA support, try birgHPCC (https://sourceforge.net/projects/birghpcc/) If you use birgHPC in your work, please cite us: Teong Han Chew, Kwee Hong Joyce-Tan, Farizuwana Akma and Mohd Shahir Shamsir. birgHPC: creating instant computing clusters for bioinformatics and molecular dynamics. Bioinformatics. Volume 27, Issue 9. pp 1320-1321. doi: 10.1093/bioinformatics/btr109
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