Simulation Software

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  • 1

    ntx

    Neutrality tests using the SNP site frequency spectrum

    Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations.
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  • 2

    octave-emf

    Electromagnetic field simulator

    Octave package for electromagnetic circuit and field simulator that computes circuit parameters and specified field distribution.
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  • 3

    octave-ocl

    OpenCL support for GNU Octave

    The Package is installable in GNU Octave and offers OpenCL support for parallelization of numerical computations. It is most effective for computations which are based on large vectors or n-dimensional arrays of numbers, and mostly (but not limited to) identical element-wise operations. The user can select which available OpenCL hardware and drivers are to be used. The Package offers new numeric data types with many built-in operations (e.g., overloaded operators). It is flexibly extendible by user-written OpenCL C programs. The Package does not, by itself, provide parallelization of higher numerical methods (like BLAS or LAPACK). The Package is also available from the corresponding Octave Forge webpage https://octave.sourceforge.io/ocl/index.html. More information on GNU Octave can be found at https://www.octave.org.
    5.0 out of 5 stars 2 Reviews
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  • 4
    Octave interface to the finite elements library Libmesh. Under the scientific interpreted language Octave, Octmesh allows using the Libmesh characteristics for the numerical simulation of partial differential equations on serial and parallel platforms.
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  • 5
    ode-viz
    This toolbox generates automatically a vtk-visualization for an ode (Open Dynamics Engine) simulation under Python. You only have to define the simulation space and world and forward these entities to the visualization. That's all... Install also via pip possible: pip install odeViz
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  • 6
    OnePanel is an Instrument for Flight Simulator (2004 and ). It is a Radio Tuning Unit, remote EFIS control, MCP designed to work specifically with the Boeing737 and Airbus A400M, using FSUIPC library.
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  • 7
    Simulation-System for cell-evolution according to Darwin's theories. The system consists of a server, simulation-units and several clients. The simulation can be computed by many computers simultaneously.
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  • 8
    private project for some modeling
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  • 9
    OpenBioGeoSim it's a open source software that simulates the stochastic origin and spread of species geographic ranges in a heterogeneous landscape. It's a free alternative based on Gary Entsminger's BioGeoSim.
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  • 10
    Small simulation that can drive a CIGI compliant IG to do EOIR sensor simulation. This is based on the OpenEaagles framework (HOST) and the MultiPurposeViewer (IG).
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  • 11
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  • 12
    openFred
    openFred - Open Factory for Research and Education Demands - is a digital factory environment with a focus on routing and scheduling issues.
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  • 13
    openSim is a software platform for the creation, simulation and visualization of system dynamics models.
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  • 14
    OpenSource decompresion software
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  • 15

    openhealthpractice

    A simulation environment for physiology models simulation

    The OpenHealhPractice Simulation Environment is a web framework intended to concurrently manage and launch generalized models. Models can be uploaded by the users and also can be connected to other models in order to simulate them in a row. These simulations are stored and can be reviewed or deleted at anytime. The Graphical Visualization Environment (GVE) provides the graphical visualization of the simulation results. Results can also be exported to different formats (xls, txt or csv). This simulation environment is built using Spring Framework and Java technologies. For more information on how to deploy and use the tool, check the installation and user manuals. This tool was developed within the Synergy project. You can view our publication about the Simulation Environment here: http://www.translational-medicine.com/content/12/S2/S7 The rest of the publication outcomes of the project can be found here: http://www.translational-medicine.com/supplements/12/S2
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  • 16
    OPENOLSRV2 is an OLSRv2 (Optimized Link State Routing protocol version 2) implementation for the ns2 network simulator.
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  • 17
    The simulation community has been accused for producing many simulation studies of bad quality. The mission of the oProbe open source project is to provide an instrument that produces statistically sound results at known quality (also see otwlan).
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  • 18
    Intelligent traffic simulation based on OpenStreetMap.
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  • 19
    This is a Verilog/AMS 1.3 Parser Frontend. Input files are preprocessed and parsed, internally stored in a VPI-object-tree representation. No elaboration or synthesis is performed.
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  • 20
    ox_black_rhino

    ox_black_rhino

    black_rhino is a multi-agent simulator for financial network analysis

    This is the outdated code of black_rhino. The new version is maintained and hosted on github. Please see https://github.com/cogeorg/black_rhino
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  • 21
    parFE is fully-parallel high-performance finite element code targeted to the modeling of trabecular bones in humans. It employs scalable multigrid solvers for efficient solutions on massively parallel computers.
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  • 22
    Partgen is a simple particle system generator and simulator. It's intended to have a 3D scene description language, and batch processing mode. Support for some scripting languages like ruby is also planned
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  • 23

    particlevis

    A particle simulation visualization program

    ParticleVis is a visualization tool specialized for loading and exploring particulate simulation data. It contains a set of features that enables powerful and useful visualizations of particle simulations to be quickly generated. Support is provided for visualization of hundreds of thousands of particles on commodity workstations, using OpenGL. Functionality includes data exploration, debugging of simulation output, and generation of presentation-quality imagery. The ability to visualize vector flow information in a variety of forms, such as arrow-lines, inscribed glyphs, and motion blurred particles, is particularly useful in the study of granular flows. User-generated information can be integrated into the visualization using features such as per-particle color maps and surface maps, per-region vector fields, and volumetric data.
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  • 24
    A text-mode simulator for the original 12-bit, 4K core memory PDP-8 desktop computer.
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  • 25
    Framework: Project for Evolutionary Predator Prey Algorithms, used to implement an evolutionary scheme based on the developement by van Laumanns. Implement testproblems, special behaviours, environments, and other yet not known features.
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