Open Source Simulation Software - Page 64

PNE provides an environment for modeling, simulating, and optimizing biological networks including regulatory and metabolic networks.

PPSim - Production process simulator (experimental).

The project serves as a simulator of photothermal therapy that efficiently destroys tumours.

PPface is vector processor emulator / simulator (SIMD array processor with 1-bit processing elements). VEPRAN language used to design parallel algorithms and operate data slices. The system allows to visualize algorithm work by viewing vector memory and registers, it supports debugging and animated program execution. To run this app on 64-bit system please install Windows Virtual PC and Windows XP Mode.

PRIN-3D (PRoto-code for Internal flows modeled by Navier-Stokes equations in 3-Dimensions) is a CFD code written in MATLAB, with turbulent and reactive capabilities.

PSI stands for Prototype-Simulate-Interact. Its aim is to provide a complete, modular, flexible and easy-to-use framework to prototype dashboards and cockpits.

PSIGHOS is a Java-based simulation library. PSIGHOS is focused on the simulation of business processes and comprises a parallel core so to reduce the execution time for large models.

PUMA is a multicast routing protocol for mobile ad hoc networks.

The Python Unified Membrane Analysis Toolkit is a suite of python tools for analyzing molecular dynamics simulations of membranes.

This project aims to modify Parallel Virtual Machine (PVM) to use benefits of RDMA-capable network interconnects, commonly used in HPC clusters.

Paean is a tool to demonstrate in real-time the effect of various error-correcting codes on data transmitted via several channel models.

PajFit (Parallel Job Fit) is simple simulator for scheduling parallel jobs. It has a GUI to see the scheduling output. It supports rigid and moldable jobs, as well as advance reservations and jobs with hard deadlines.

PanoPhoto is intended to combine panoramic photos made on the Moon and compare resulting panorams with 3D models of the Moon surface. Language is Russian. Комбинирует панорамные фотографии, сделанные (в основном) на Луне и позволяет сравнить полученную панораму с 3D-моделью лунной поверхности.

A Open Source 3D Immersive simulation environment, like the "second life", with some distribuited processing tools, to make the GRID power growup with every new node (client machine) attached.

Conway's Game of Life for parallel computers with MPI.

PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.

This project implements the parallelized version of the LBG vector quantization algorithm on Cell Broadband Engine.

Application for soft tissue modeling which provides on-line or off-line computation based on user's defined FEM (finite element method).

ParallelSim is a parallel processor simulator written in Java which shows the effect of increasing the workload keeping the number of processing elements constant in one simulation. The number of processors is scalable and can be increased in subsequent iterations of simulation. The parameters like initial load, load offset, number of processors are declared as constants and can be changed directly in the source code to emulate different scenarios. It is also capable of plotting a graph at the end of each simulation to give an overview of how the simulation went. The output of simulation will vary from machine to machine depending upon the underlying hardware, for e.g., the timings will be different on a dual core and a quad core processor. Feel free to reach out to me if you have any suggestions or queries.

ParamIT is a toolkit aiding the development of molecular mechanical force field parameterization of small, drag like, molecules within CHARMM general force field (CGenFF) protocol. The developed toolkit helps the researchers in following ways: 1) automating the creation of multiple input files for quantum and molecular mechanics programs, 2) automating the output analysis and 3) substitute the use of full MM programs with a faster specialized one. The developed tools include: 1) generator of molecule-water complexes with graphical user interface (GUI), 2) semi-automatic frequency analysis using symbolic potential energy distribution matrix and comparison of optimized internal coordinates, 3) GUI for charge fitting with three modes: manual, Monte-Carlo sampling or brute force, and 4) GUI for dihedral terms fitting. The usage of these tools decreases the labor effort, lowers manual input errors and reduces the time needed for accurate MM parameterization efforts.

ParsNIP takes the ascii PTRAC files produced with MCNP radiation transport code and parses into a one-line = one-event format which can then be further processed in MATLAB, Excel etc. if necessary.

parsing simulator can be used to determine first ,follow , nullable and can be used to calculate LR items.

A particle swarm optimization demo written by students in the digital communication msc program (2010) at uni-kiel.

A GPU GLSL implementation of a Uniform-Grid accelerated Ray Tracer. Basic test boxes and Stanford bunny are currently renderable. Tested on ATI X1600 mobile, FireGL V3400, and 8800gt.