CryptoHawk can calculate hashes (md2,md4,md5,sha-1,sha-256 and hmac). It can also perform cryptanalysis like frequency analysis for substutition cipher and exhaustive key search for rotation cipher, as well as searching internet databases for md5 hashes.
dumpnet is a collection of bash scripts that allows you to backup multiple servers simultaneously. You can do incremental file system dumps with tar, dump and rsync, backup databases and much more. AIDE can also easily be integrated.
'Spot The Difference' is a file integrity checker developed in python. It is OS independent, easy to use and fast. It supports most of the open-sourcedatabases (MySQL, PostgreSQL, SQLite and dbm).
DominoDig is a perl program designed to help facilitate auditing Lotus Domino web servers. Produces an HTML report that provides a list of all the unique .nsf databases it was able to access, as well as IP addresses and email addresses.
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MetaCoretex security scanner is an extreemely modular plugin based security scanner written entirely in JAVA to allow the use of JDBC Type IV drivers when scanning databases. Initially, most plugins will likely be for DBs.
ACID is a PHP-based analysis engine to search and process a database of
security incidents generated by security-related software such as IDSes
and firewalls (e.g. Snort, ipchains).
CMS identifier (cmsident) attempts to identify the content management system used to generate a given web site (and its version). Future versions will automatically look up found versions in vulnerability databases to alert if updates are necessary.