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  • 1

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support from...
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    Downloads: 138 This Week
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  • 2
    We provided a normal method to fit 2/3D open or closed curves. With fitting results, we can make morphometric analyses of some samples. If you have any questions, please contact Shengmin Zhou(email: 2495077522@qq.com or 220180304@seu.edu.cn). If you want to download this project and use it, please cite the paper: Zhou, S., Li, B. & Nie, H. Parametric fitting and morphometric analysis of 3D open curves based on discrete cosine transform. Zoomorphology (2021). https://doi.org/10.1007/s00435...
    Downloads: 0 This Week
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  • 3
    openSUSE Education - discontinued

    openSUSE Education - discontinued

    Li-f-e: Linux for Education

    For the latest releases see: https://sourceforge.net/projects/cyberorg-home/files/Li-f-e/
    Downloads: 2 This Week
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  • 4

    detectMITE

    Detection of Miniature Inverted Repeat Transposable Elements

    detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect...
    Downloads: 0 This Week
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    Case Management Software for Social Services

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  • 5

    Science & Engineering Inventory

    Rediscover the Simplicity http://www.atgclabs.com/

    Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn full-featured solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab...
    Downloads: 0 This Week
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  • 6

    Chemical Inventory

    Rediscover the Simplicity http://www.atgclabs.com/

    Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can provide you with the advanced functionality you require enabling you to regain control of your...
    Downloads: 0 This Week
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  • 7

    Lab Inventory

    Rediscover the Simplicity www.atgclabs.com

    Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can...
    Downloads: 0 This Week
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  • 8

    detectIR

    Detection of Perfect and Imperfect Inverted Repeats

    detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual Please...
    Downloads: 0 This Week
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  • 9

    GENIE (GEne-geNe IntEraction)

    GPU based Parallel Gene-Gene Interaction Analysis

    ... interaction analysis for binary traits. Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis. Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores. BMC research notes, 4(1), 158.
    Downloads: 0 This Week
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    Cyber Risk Assessment and Management Platform

    ConnectWise Identify is a powerful cybersecurity risk assessment platform offering strategic cybersecurity assessments and recommendations.

    When it comes to cybersecurity, what your clients don’t know can really hurt them. And believe it or not, keep them safe starts with asking questions. With ConnectWise Identify Assessment, get access to risk assessment backed by the NIST Cybersecurity Framework to uncover risks across your client’s entire business, not just their networks. With a clearly defined, easy-to-read risk report in hand, you can start having meaningful security conversations that can get you on the path of keeping your clients protected from every angle. Choose from two assessment levels to cover every client’s need, from the Essentials to cover the basics to our Comprehensive Assessment to dive deeper to uncover additional risks. Our intuitive heat map shows you your client’s overall risk level and priority to address risks based on probability and financial impact. Each report includes remediation recommendations to help you create a revenue-generating action plan.
  • 10
    fropho calculates phonon properties in crystal, which is based on Parlinski-Li-Kawazoe method. Information of forces acting on atoms when an atom is displaced is required as input information. fropho is going to be replaced by phonopy.sourceforge.net.
    Downloads: 0 This Week
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  • 11
    This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.
    Downloads: 0 This Week
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  • 12
    It's a project to predict peptide fragmentation of mass spectrometry. Check the detail at Anal Chem. 2011 Feb 1;83(3):790-6. On the accuracy and limits of peptide fragmentation spectrum prediction. Li S, Arnold RJ, Tang H, Radivoja
    Downloads: 0 This Week
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  • 13
    Raster Operations Sequence Engine. Geospatial Raster Processing Template Library. A remote sensing raster processing strategies library. Project Member: Li Fenghua (Ellil) e-Mail: el@librose.org
    Downloads: 0 This Week
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  • 14
    Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
    Downloads: 0 This Week
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  • 15
    calioPY (keh-li'-oh-pie) is Python software that lets you visualize, organize, publish and collaborate on calculations, clearly and simply. It runs in the Leo organizer and knows how to format text, equations, tables, plots, figures, and merge documents
    Downloads: 0 This Week
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