Search Results for "format tool"
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Showing 127 open source projects for "format tool"
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ImHex
A Hex Editor for Reverse Engineers, Programmers
ImHex is a Hex Editor, a tool to display, decode and analyze binary data to reverse engineer their format, extract informations or patch values in them. What makes ImHex special is that it has many advanced features that can often only be found in paid applications. Such features are a completely custom binary template and pattern language to decode and highlight structures in the data, a graphical node-based data processor to pre-process values before they're displayed, a disassembler, diffing support, bookmarks and much much more. ... -
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Bowtie 2
A fast and sensitive gapped read aligner
...It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. Bowtie 2 outputs alignments in SAM format and includes companion utilities for building and inspecting indexes. It is widely used in bioinformatics pipelines for RNA-seq, DNA-seq, metagenomics, variant analysis, and other sequencing-based research tasks. ... -
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CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. The CBFLIB API is loosely based on the CIFPARSE API for mmCIF files.
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IEDExplorer
IEC61850 IED Explorer in .net
IEDExplorer is an IEC 61850 client tool written for testing and educational purposes. IEDExplorer can connect to an IEC61850 device (also called an IED) over MMS (ISO/IEC9506-1 and ISO/IEC 9506-2) communication protocol. The tool is written in pure C# including the MMS ASN.1 parser (based on BinaryNotes ASN.1 tool) and runs in .net environment, on Windows. Linux/Mono support has been lost on the way (volunteers welcome). See Features for what the tool can do for you. I will appreciate... -
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a R package. 'Qair' gives access to data bases used by air quality monitoring associations in France. It also contains functions to manipualte air quality datas.
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NibblePro
CAM software for punch press machines (CNC punching)
...CLICK "MORE INFO" THEN "RUN ANYWAY". Features: - DXF import with multi-part sheet layout - Configurable tool revolver (.arw format) - Punching, nibbling lines/arcs, hole grids, corner notches - NC program export (G-code) - Sheet repositioning (G25/G27) - NC simulation with step-by-step animation - Available in Polish, English, and German Want NibblePro to support your machine? Contact me: p.wojcik.cnc@gmail.com -
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LaBB-CAT
A linguistic annotation store
LABB-CAT is a browser-based linguistics research tool that stores recordings and regular-expression searchable text transcripts of interviews. The search results, entire transcripts, and media, can be viewed or exported in a variety of format -
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Social Network Visualizer
Social Network Analysis and Visualization software
Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder) -
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JaxoDraw
JaxoDraw: Feynman Diagrams made easy!
JaxoDraw is a tool to generate Feynman diagrams in a mouse click-and-drag fashion. Graphs can be exported to a variety of graphics formats and arbitrary latex code can be used for labels to produce high-quality publishing-style figures. -
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SDF Merger
Desktop application for merging multiple SDF files into a single SDF
...Language: Python 3 2. GUI Framework: Tkinter 3. Chemistry Library: RDKit for chemical data processing 4. File Formats: Input/Output in SDF format Citation Md. Ismiel Hossen, A. (2026). SDF Merger: A Desktop and Web Tool for Merging Chemical Structure Data Files (v1.1). Zenodo. https://doi.org/10.5281/zenodo.18291398 -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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Ignition tag generator
Generate tags for Ignition 8.1.X
This tool is a lightweight Java-based generator that creates JSON files with a hierarchical Folder/UDT/Tag structure. It’s designed to help you quickly populate your Ignition tag system by pre-defining common tag properties. With an easy-to-use Swing interface, you can build and manage your tag hierarchy, then export it as a ready-to-import JSON file. Requires Java 8 or later. Make sure JAVA_HOME or PATH includes your Java directory. No affiliation with Ignition/I.A. -
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JQM Java Quine McCluskey
JQM - Java Quine McCluskey for minimization of Boolean functions.
Java Quine McCluskey (JQM) implements the Quine-McCluskey algorithm with Petrick’s Method for minimizing Boolean functions. Designed for both education and industrial application, it handles up to 16 variables and functions. Uniquely, JQM bridges the gap between theory and practice: it visualizes the solution process with generated Karnaugh Maps for students, while supporting PLC engineers by exporting results to Structured Text (ST) and Ladder Diagram (LD). The software includes a GUI for... -
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PGMania
Astrophotography image & video processor. Full processing cycle
PGMania is a universal package for processing deep space images. The program provides wide and unique functionality, a powerful and flexible tool with a clear and user-friendly interface. The program performs all image processing cycles for astrophotography, including filtering, cleaning, aligning, image calibrating, stacking, post-processing, format conversion, cropping, rotations, many special operations and much more. PGMania is environmentally friendly - it does not clutter your photos with something that was never there. ... -
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Sezioni
Python tool for section property evaluation and stress calculation
...Results are plot with selectable color maps. Point results are listed and may be exported. Section can be also input in Nastran style and then exported to a .bdf format file. -
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. ... -
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ePnR
ePnR is an IC block standard cell placement & routing tool
...However, un-routed connections will be left with rubberband connections and marked start and end points for subsequent manual routing using a third party layout editor. ePnR outputs in CIF 2.0 and GDS stream format readable by e.g. the free KLayout editor. -
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BoltGenerator
BoltGenerator is an automated CAD tool which produces 3D bolts.
BoltGenerator is an automated CAD tool which produces 3D bolts per ISO and ASME specifications, built using OpenCASCADE and Qt technologies. Users select their desired thread, head type, and length. Upon export, a fully-featured CAD part is generated in real-time and written to the universal STEP format. The exported files are consistently named based on user selections, making creation and organization simple. -
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Splicing Prediction Pipeline
Splicing Prediction Pipeline or SPiP
SPiP is a tool to predict the splice alteration of variant by integrate several prediction tool in a global pipeline. You can also download SPiP in zip format: https://sourceforge.net/projects/splicing-prediction-pipeline/files/SPiP_alone_v2_1.zip For Linux (GitHub): https://github.com/LBGC-CFB/SPiP If you have questions, please contact me to: r.leman@baclesse.unicancer.fr or raphael.leman@orange.fr v2.1 corrected (07/2021) : correction of score calculation v2.1 (06/2021): Most strigent on "Alter by complex event" v2.0 (04/2021): New SPiP with random forest modelization old change detailled in https://sourceforge.net/projects/splicing-prediction-pipeline/files/changeLogBeforev2.0.txt -
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Curv
A language for making art using mathematics
Curv is a programming language for creating art using mathematics. It's a 2D and 3D geometric modelling tool that supports full colour, animation and 3D printing. Curv is a simple, powerful, dynamically typed, pure functional programming language. Curv is easy to use for beginners. It has a standard library of predefined geometric shapes, plus operators for transforming and combining shapes. These can be plugged together like Lego to make 2D and 3D models. Coloured shapes are represented... -
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MutaNET
NGS Pipeline and Automated Mutation Analysis
MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance. -
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Pytorch Points 3D
Pytorch framework for doing deep learning on point clouds
...Each base class supports a different data format. -
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JDecisiontable
Stop to rack your brain, start using process-oriented decision tables!
This tool is about a method called "process-oriented decision tables". These are decision tables but different from "normal" decision tables. They fix the flaws of traditional decision tables making it a joy to work with. But they keep all benefits of traditional decision tables. First of all they present the logic in a very dense form. 1. Explore all possible combinations of conditions and actions by question-and-answer. 2. Have a compact one-sheet-view on complex logic. ... -
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DICOV
MATLAB-based Dicom converter and viewer
DICOV (Dicom COnVerter) is a MATLAB-based tool for converting Dicom files into Analyze format with SPM orientation. Also, it supports simple Dicom viewer. As it utilizes some functions in SPM8, SPM8 should be installed and its path should be included to MATLAB path. A 64bit environment with more than 8GB RAM is required for DICOV (MAC OSX is recommended.). Dicom is unified medical image format, but there're some variability across the imaging systems. -
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MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
...MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome variability and disease-associations for mitochondrial variants. MToolBox provides also a Variant Call Format file (version 4.0) featuring, for the first time, allele-specific heteroplasmy. ...
