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We present an improved ball and stick representation called HyperBalls. This type of depiction is particularly useful to represent dynamic phenomena, such as the evolution of non covalent bonds and takes advantage of GPU capabilities.
HyperBalls are now fully integrated into the UnityMol software and are actively developed in that context. You will find the most up-to-date versions of the shaders in the http://unitymol.sourceforge.net project.
An open-source corpus analysis class library written in C#. GUI of Tenka Text 0.1.3 comes with Wordlister - an advanced, extremely fast graphical wordlist tool and a simple regex concordance tool. Tenka Text - the open-source answer to WordSmith Tool
SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.
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This project is aiming at completing a library of open codes (mainly based on MATLAB at present) to deal with Dipoles-Cavity Interaction problems. Common methods, including Green's function method and Master Equation method et al, will be applied to the coding. Samples of calculations and standard comparison with publications using the library will be given for demonstration of the usage. Interface to some commonly used software, such as Lumerical FDTD...
This is a Python program based on the NegEx algorithm that detects the polarity of the clinical evidence in clinical random trials.
If you use this code please cite this paper:
P. Davis-Desmond and Diego Mollá. Detection of Evidence in Clinical Research Papers (2012). Australasian Workshop On Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia.
http://www.ics.mq.edu.au/~diego/publications/hikm12.pdf
Lightweight modelling program in which you can create, try and adjust your control (not only) system. Kernel of this program is MBricks - cross-platform collection of bricks. Created in Math Bricks system can be implemented in one *.h file.
OpenBioGeoSim it's a opensourcesoftware that simulates the stochastic origin and spread of species geographic ranges in a heterogeneous landscape. It's a free alternative based on Gary Entsminger's BioGeoSim.
Open source web tool to help you in the data visualisation
SVGMap is an open source web tool to help you in the visualisation of experimental data associated to some graphical representation.
More at :
1. Project website
http://bg.upf.edu/svgmap
2. Reference :
Xavier Rafael-Palou, Michael P. Schroeder, and Nuria Lopez-Bigas
SVGMap: configurable image browser for experimental data
Bioinformatics 2011 : btr581v1-btr581.
Transform your applications and workflows into powerful agentic systems at global scale.
Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
The Open Instrumentation Project provides opensourcesoftware for graphical user interface and control of computer-based lab instruments. Current instruments include an oscilloscope, waveform generator, CircuitGear, multimeter and network analyser.
RepMiner takes a graph theory approach to the classification and assembly of the repetitive fraction of genomic sequence data. Sequence lengths analyzed by RepMiner can range from full length transposable elements to low coverage sample sequence data.
Industrial Ethernet Network Performance (IENetP) Test Tool developed by the National Institute of Standards & Technology (NIST). This test tool determines the network performance of industrial devices using standardized metrics and tests.
This software automates the data cleaning and error checking process of Lizard data logger (Activity Meter) CSV files while maintaining data integrity. It also provides the opportunity to clean and merge one or more lizards log files at once.
The Decision Deck project aims at developing a generic decision aid platform composed of modular "software components". These software components implement the common functionalities of a large range of multiple criteria decision aid methods. This
"MITO - Medical Imaging TOolkit" is an open-source, Windows-based software architecture for advanced Medical Imaging. Main characteristics are: DICOM compliant, 2D/3D/S3D visualization, image segmentation and fusion, ROI, advanced 3D user interface
Nomin is a mapping engine for the Java platform. It provides abilities to transform object trees using declarative mapping rules. Main features are no XML configuration, intuitively looking mapping, using arbitrary expressions/method invocations.
A complete OpenCascade - OCAF based CAD framework.Note that this is not the original SALOME GEOM project but an effort to create a standalone framework based on the existing one from SALOME project, with the addition of extra functionality.
This material enables IBM SPSS Statistics users to run code written in the R language inside Statistics.
Additional free items for R in Statistics and other materials are available from the SPSS Community at www.ibm.com/developerworks/spssdevcentral
AMELiA is a collection of libraries developed at the Arts, Media and Engineering Program at Arizona State University. It includes the AME Patterns library, a generic C++ library for modeling, recognition and synthesis of sequential patterns.
PILS is a dynamic, functional programming language with a unified model of data and programs.
The name is simply a permutation of Lisp but PILS is definitely not Lisp.
OpenEphyra is an open framework for question answering (QA). It retrieves answers to natural language questions from the Web and other sources. Visit http://www.ephyra.info/ for more details and information on joining this open research initiative.