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Showing 4379 open source projects for "java projects on linux"
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Olorin is an interactive filtering tool for next generation sequencing data coming from the study of large complex disease pedigrees.
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birgHPCC
Rapid CUDA Cluster Deployment
birgHPCC is a major improvement over birgHPC (http://sourceforge.net/projects/birghpc/). While retaining the major functions of the original birgHPC, including automated computing cluster conversion and auto slots detection, the new version (birgHPCC) is capable of creating and configuring a compute unified device architecture (CUDA) computing cluster, hence the extra “C” in the name. In addition to the increase in image size (less than 2 gigabytes) and a new Linux base (previously Debian, now Ubuntu), CUDA-capable bioinformatics software programs, such as NAMD, HOOMD-blue, VMD, GPU-HMMER and GPU-BLAST, are pre-installed in birgHPCC, along with the CUDA driver, libraries and software development kit (SDK). ... -
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openBmap
a free and open map of wireless communicating objects
openBmap collects data and provides open maps and statistics of all communicating objects: cellular antennas, wifi hotspots. All softwares from back-end to client are open-source under AGPL v3 license. -
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XNavigator - OpenStreetMap Globe
XNavigator is a Virtual Earth browser and viewer for http://osm-3d.org
XNavigator is the online viewer for the OpenStreetMap Globe at http://osm-3d.org and much more. It is an interactive 3D viewer and integrated client for exploring virtual city and landscape models. A wide range of interaction and navigation possibilities makes it easy to visualize and analyze very detailed virtual urban environments. XNavigator is the first application that supports the Web3DService (W3DS) service interface. -
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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Convert GPS-Tracks to KML
Convert GPS-Tracks user-saved tracks to KML files for Google Earth.
...The GPS-Tracks iPhone application is available from the App Store or from http://www.gps-tracks.com . It can save recorded GPS tracks to the iPhone storage. This little Java applet provides the functionality to convert these saved tracks to KML files, for use with Google earth. Under Windows, it uses the synced files from the iTunes phone files backup, and extracts the tracks from there. Under Linux, it uses the virtual file system provided by libgpod (which provides an iPhone-gvfs-bridge) and gvfs-fuse (which offers gvfs virtual filesystems as Linux FUSE filesystems). ... -
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Jnomics
Jnomics is a collection of cloud-scale DNA sequence analysis tools
Jnomics is a collection of cloud-scale DNA sequence analysis tools -
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Javamony
A Student's Approach to the Phylogenetic Problem
Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve fundamental problems in phylogenetics. ... -
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MoonPlanner
Moon calendar: shows moon's phase, signs and relatives plant's part
MoonPlanner is a Java calendar that allow to view moon's phases, moon's signs (constellations in which the moon is), and show the part of the plant corresponding to each sign (flower, fruit, leaf or root). For every calendar's day the user can attach notes (that are stored in a persistent database). At the startup the program will remind you if there will be notes for current day. Timezones and localizations (En, IT) are supported by the application. This calendar is usable between 1900... -
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CUO
Codon Usage Optimizer
CUO is a GUI-based multiplatform software written in Java. It is open source and built with a user/developer-friendly structure. The main function of the software at the current development stage is to optimize genes to be transformed into the Chlamydomonas reinhardtii chloroplast genome although it can be used to optimize genes into other hosts as well. The main tool in CUO, Moptimizer, introduces a semi-automatic way of gene optimization which provides more flexibility and accuracy during... -
Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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Maket is a instrument for building knowledge bases for economics domains. The project has moved to http://gitorious.org/maket
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JECL, pronounced "Jekyll", is an open-source Java library implementing a variety of evolutionary algorithms. The goal is to provide a uniform interface for describing problems, running evolutionary algorithms, and accumulating results. The Java Evolutionary Computation Library is no longer under active development. We suggest the MOEA Framework (http://www.moeaframework.org/), jMetal (http://jmetal.sourceforge.net/), ECJ (http://cs.gmu.edu/~eclab/projects/ecj/) or JGAP (http://jgap.sourceforge.net/) as alternatives.
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ipmems
Real-time data acquisition and visualization software
Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module. -
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TextComparer
Small Java program to compare two texts
Small Java program to compare two texts, originally designed to be used to find quotations in a Byzantine anthology. It can quite likely be used to detect plagiarism between two texts as well Graphical interface which allows easy navigation between corresponding parts in the two different texts. Uses the http://software.jessies.org/salma-hayek/ Java TextArea for this. Probably very much can be done to improve this program and the algorithm which it uses. -
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GA/SVM_BMC
GA/SVM for feature selection in microarraydata
GA/SVM for feature selection in microarraydata -
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elinfo_parabolic
To simulate parabolic motion
Application software to simulate parabolic motion depend on degree and initial speed given by user. Parabolic motion will be shown as simple animation in the application window. This application created at Elinfo "Roborace and Java IT Competition 2010" held by Universitas Negeri Yogyakarta. -
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egrsa
rsa-elgamal comparison
compare time of process between rsa and elgamal algorithm used to encryption and digital signature. -
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AMESProject
A "simple but not too simple" laboratory for wholesale power markets.
The wholesale power market design proposed by the U.S. Federal Energy Regulatory Commission (FERC) in an April 2003 white paper [FERC 2003] encompasses the following core features: 1. Central management by an independent market operator. 2. A two-settlement system consisting of a day-ahead market supported by a parallel real-time market to ensure continual balancing of supply and demand for power. 3. Management of grid congestion by means of locational marginal pricing (LMP), i.e., the... -
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QuartzCrystal
Electric Behaviour of Crystals and Pierce Crystal Oscillators
The Java applet QuartzCrystal shows the frequency response of quartz crystals and Pierce crystal oscillators. Crystal parameters can be freely choosen. Display is spectrum analyzer-like and shows the amplitude/phase and/or a Nyquist diagram. Crystals can be series resonant or with load capacitance. Adding of spurious resonances is possible. -
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A very simple command line tool to convert OSM files to Shapefiles. Written in Java. Think of it as a self-study project.
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zephyr
Experiment automation
Zephyr is a script-driven experiment automation program that works various measurement instruments and actuators. It supports instruments from Agilent, Eco Physics, ICS Electronics, Keithley, Omega, Teledyne and other manufacturers. The script language is XML-based. Syntax highlighting is available. The source code is included in the distribution. Contact the project admin to get SVN access. -
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locsmoc
piecewise polynomial curves for genomic signals
Locsmoc produces piecewise polynomial models for one-dimensional signals of the type encountered in genomics. The project wiki contains an overview of the tool and usage examples. -
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OpenETran
Electric power system transient simulator
During the period from 1990 through 2002, EPRI funded the development of a Lightning Protection Design Workstation (LPDW), which was used by many utilities to assess the lightning performance of distribution lines. Since about 2002, this program has not been available. EPRI decided to release the simulation kernel of LPDW under an open-source license (GPL v3), so it may be incorporated into IEEE Flash and other projects. OpenETran can presently simulate multi-conductor power lines,... -
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sigTOOL provides a user-extendable signal analysis environment for processing electrophysiological data within MATLAB. Neuron spike-train, + spectral and time-domain analyses are built in. See http://dx.doi.org/10.1016/j.jneumeth.2008.11.004
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The Self-Organizing Map Maker for Education and Research. Features include 3D-visualization of the training process, various 2D and 3D map topologies, easy extensibility to additional topologies.
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Yaşını Bul
A program to find your age
Yaşını Bul is a program to find your age with day, month and year enterence today and born date.