Search Results for "python tool" - Page 5
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Showing 241 open source projects for "python tool"
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LER&LWR Calculator
Tool for line edge parameters calculation
Load a folder with images from raster electron microscope, choose necessary options and let the algorythm calculate the characteristics of the line. -
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Blivion
Blivion: BioLayer Interferometry Virus On (only)
Blivion is a software tool for analysing biolayer interferometry measurements of the binding of large vesicles such as influenza virus onto a two-dimensional ligand-coated substrate. -
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DimensionalAnalysis
Performs dimensional analysis from cells in a spreadsheet.
...Make sure the names match the contents of the name cells. Use the names in the formulas, not the cell addresses. To use the Dimension Analysis tool, select and copy the cells, then paste them into the tool’s input text box. Requires Python 3 plus SymPy and mpmath packages. http://www.sympy.org http://mpmath.org/ -
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PyCosmic is a tool to detect and clean single images from the disturbing cosmic ray hits. It was designed and tested specifically for CALIFA and other fiber-fed integral-field spectroscopy dataset. It is written in Python and can be executed from the command line. New release is version v0.5. Updated to be compatible with numpy version 1.12. New release is version v0.4.
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SCons gnuplot tool
SCons tool to cooperate with gnuplot program
SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This package is an extension (tool) to SCons, which enables "compilation" of gnuplot scripts in SCons-based projects. The intended audience include (but is not limited to) authors/publishers of LaTeX documents, scientific comunity and authors of the projects relying on automatic generation of plots. -
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Chromensics - Google Chrome Forensics
A Google chrome forensics tool
The Chromensics tool is developed to read all information from chrome browser directory and present it to user, in easy readable tabular format which can be explored in descent interface without running the chrome browser. The tool will also allow you retrieve information from other chrome installation brought from different machine for analyzing. The acquired artifacts can be exported in PDF report to present it in court of law or to superiors. -Update 04/02/2017- Standardized all date... -
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
...GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the Simulator more intuitive, the input parameters are expressed as standard epidemiological quantities. GENS2 is written in Python language and takes advantage of operators and modules provided by the simuPOP simulation environment. It can be used through a graphical or a command-line interface. -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to... -
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BiBler
Tool to manage and manipulate BibTeX entries
BiBler is a software for managing references to scientific articles using BibTeX. BiBler runs with a windows GUI or can be used as a Python library -
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CorNetMap
A tool for Gene Expression Correlation Network
Capabilities of CorNetMap: 1. Read data as tab-delimited text file. Can be used for analysis of any data set beyond gene expression. 2. Capable of both two-dimensional and multidimensional data analysis. 3. Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation:... -
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Condor GUI
GUI for managing and working with one or more HTCondor pools.
Condor GUI is a tool for managing and working with one or more HTCondor pools. It was developed at the Otto von Guericke University Magdeburg, Germany, to support the daily work using HTCondor. Version History: Version 0.9.3: - QDarkStyleSheet is an optional package now Version 0.9.2: - New layout of job file editor - Keyword arguments in job file editor - Linux compatibility -
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Leave A Trace Tools
Tools for reading the track data of the project "Leave a Trace"
...It is installed as a permanent exhibition within the Charité in Berlin, Germany. Please find more Details about LAT here: https://leave-a-trace.charite.de/action This sourceforge project provides python tools to read the raw XML data produced by LAT. The data reading module works with python2 and python3. LAT XML Data can be downloaded here: https://leave-a-trace.charite.de/action/xml_dateien_der_traces/ ## Visualization tool: This project also contains a GUI-based visualization tool, which allows creation of custom vector data (SVG) from the given LAT data. ... -
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Etchimaths(A'LEVEL)
Etchimaths(A'LEVEL) is a typical Mathematics software for A'LEVEL
Etchimaths(A'LEVEL) is a Mathematics software, a helping tool for Mathematics simulation(solving) and study for the GCE ADVANCED LEVEL standard.It is a solving machine as well as a teaching machine -
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PhaseSpace
Analyse dynamical systems, plot its phase space and critical points.
Phase Space is born out of the need of a simple yet powerful open source tool to study dynamical systems. PhaseSpace allows you to plot the phase space of the dynamical system you are studying, its critical points and the curves of slope zero and infinite.It can also plot the solutions of the system and it's vector field. To use PhaseSpace you'll need to have Python installed along with Matplotlib and Numpy. -
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forest01
Automatic delineation of forest borderlines
Forest01 is a tool for the automatic mapping of forest based on Airborne Laser Scanner data. The forest mapping is performed by means of quantitative criteria typical of forest definitions, namely minimum threshold for the height of trees, canopy cover, forest area size and width. -
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LGTmate
Lateral Gene Transfer utility
LGTmate is a simple and powerful bioinformatic software tool to identify lateral gene transfer events and contaminants in Eukaryotic proteomes. It is available as a GUI or command-line application, with no dependencies and no installation required. -
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Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
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SAT-Assembler
Scalable and accurate targeted gene assembly for large-scale NGS data
SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms. -
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PortOpt
A portfolio-optimizer using Markowitz(1952) mean-variance model
PortOpt [Portfolio Optimizer] is a C++ program (with Python binding) implementing the Markowitz(1952) mean-variance model with agent's linear indifference curves toward risk in order to find the optimal assets portfolio under risk. You have to provide PortOpt (in text files or - if you use the api - using your own code) the variance/covariance matrix of the assets, their average returns and the agent risk preference. -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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PyLogAnalyser
A Python multiplatform tool to filter, colorise and analyse logs
...The final goal of this tool is to ameliorate reading long and difficult b/w logs, speed up the analysis and enhance day to day wearying activities. As common application, you can colorise adb logcat logs taking the example files and using them (and also, filter unnecessary lines). You can INSTALL it from PyPI: $ python -m pip install pyloganalyser -
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Graphical tool for managing database of geocaches and waypoints, importing GPX files and exporting geocaches to many formats including GPX, POI, HTML and others.
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Astrophotography Lab
A collection of useful tools for astrophotographers
Astrophotography Lab (APLab) is a free program intended for anyone interested in astrophotography. It has two main purposes: - Interpreting data extracted from your astrophotos to produce useful information. - Using this information as a help for further improving your imaging results. The program consists of four main tools: an analyser tool, a calculator tool, a simulator tool and a plotting tool. The tools are connected, allowing you to transfer information between them, and easily... -
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Qfsm
A graphical Finite State Machine (FSM) designer.
A graphical tool for designing finite state machines and exporting them to Hardware Description Languages, such as VHDL, AHDL, Verilog, or Ragel/SMC files for C, C++, Objective-C, Java, Python, PHP, Perl, Lua code generation. -
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LightProfiler
Profiler for Oracle extended SQL trace files
LightProfiler – application for performance analysis of the Oracle databases. It generates detailed resource profile for extended SQL trace files (10046 event), containing information about consuming of response time (by events, by cursors, etc.), data files usage, error analysis (SQL, PL/SQL) and much more. Also it contain tools for additional processing of trace files (extract session data, splitting files) and for management of database's sessions (disconnecting, tracing, monitor...
