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Showing 1515 open source projects for "learning linux command line"
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Firmware mod for the GWInstek GPP-x32x series lab bench supply.
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AstroBioTools
Adaptive analysis of amino acid alphabets
A new, fast implementation of algorithms used for the adaptive analysis of amino acid alphabets as described in Philip, G. K., & Freeland, S. J. (2011). Did evolution select a nonrandom “alphabet” of amino acids? Astrobiology, 11(3), 235-240. Ilardo, M., Meringer, M., Freeland, S., Rasulev, B., & Cleaves II, H. J. (2015). Extraordinarily adaptive properties of the genetically encoded amino acids. Scientific reports, 5, 9414. Ilardo, M., Bose, R., Meringer, M., Rasulev, B.,... -
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and... -
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Library of Java code to interact with the data-recording formats (RPFITS and PSRFITS) used at the Australia Telescope National Facility (ATNF). It also provides tools for extracting metadata from the files for supply to Virtual Observatory instances.
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The 3D Toolkit provides algorithms and methods to process 3D point clouds. In includes automatic precise registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc.
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The project builds a new AI of AIBO from scratch. Currently, I have a white ERS-7 model, Rakka. Project is based on Boost, Qt, OpenCV, other 3rd party software and my own source codes.
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This is an implementation of brazilian portuguese metaphone. Its importance is on strings lookups like names, streets names, words (aspell) etc, made as simple as possible. There is a very large text analysis field to explore with it.
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genppi
GENPPI: standalone software for creating protein interaction networks
Our software GENPPI is efficient because, for example, it creates interaction networks from the central genome of 50 species/lineages of Corynebacterium, with an average size of 2200 genes, in less than 40 minutes, on a conventional computer. Our software is compelling because the interaction networks that it creates reflect evolutionary relationships between species and obtained in Average Nucleotide Identity (ANI) analyzes. Also, It allows the user to define how he intends to explore the... -
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igspread
converts between IGES file and text file
Command-line interface program that converts between IGES file and text file. IGES files are compatible with most of CAD systems. This program permits you to convert curves and points created in CAD program into coordinates in text file or you can do the opposite - convert text files into curves. It is especially suitable for curves described by hundreds of coordinates, e.g. airfoil contours of aircraft wings. Output filename is either out.txt or out.igs. -
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Charmol
Program for molecular graphics
Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces... -
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MOSSCO
Modular System for Shelves and Coasts
The Modular System for Shelves and Coasts (MOSSCO) is a coupling framework for Earth System Models. It helps users to integrate their own numerical models with other developments. Quick Start: git clone git://git.code.sf.net/p/mossco/setups mossco-setups git clone git://git.code.sf.net/p/mossco/code mossco-code cd mossco-code cat QuickStart.md or read online https://sf.net/p/mossco/code/ci/master/tree/QuickStart.md Beware: this is alpha software, expect... -
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Visashot
A python screenshot script for vintage test & measurement instruments
Visashot lets you capture screenshots from vintage Test & Measurement equipment like oscilloscopes and spectrum analyzers. Visashot uses the VISA abstraction layer and associated libraries to access instruments over HP-IB (GP-IB), serial, ethernet and other supported interfaces. At the moment 80+ instruments are supported. All are from HP/Agilent/Keysight but models from other brands could be supported as well, please consider contributing! -
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polynomial-roots-calculation
Application for calculating the real roots of a polynomial
Application for polynomial roots calculation. The application does the job by supposing the roots of the derivative function are known. This way, we can delimit the range where each possible root is in, and by applying Bolzano's theorem, we can find the zeroes. It is not a very eficient way, as we must calculate al the derivatives of the polinomial, implying very high numbers (n!), that make the needed precision increase, making the computational complexity for high-degree polinomials... -
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MANTI
MANTI - Mastering Advanced N-Termini Interpretation
MANTI is a one-stop shop N-termini annotation & evaluation solution. MANTI was previously (un)known as muda.pl ahead of v3.7, the project was renamed to MANTI.pl with v3.7 on 2019-06-24. It congregates information from different MaxQuant or DiaNN/MSFragger output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred... -
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nars2000
NARS2000: An Experimental APL Interpreter
APL is an arrary-oriented language initially conceived in the 1960s by Kenneth E. Iverson, IBM Fellow and 1979 ACM Turing Award recipient. It is ideally suited to computer programming because it subsumes the tedious aspects of the job allowing the programmer to concentrate on the heart of the project. NARS2000 is a Free Open Source implementation of APL. For more details on this project, visit the NARS2000.org website. -
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contools
console tools, batch scripts, shell scripts, shell tools, utilities
https://sourceforge.net/p/contools/contools/ci/master/tree/README.md https://sourceforge.net/p/contools/contools/ci/master/tree/README_EN.txt https://sourceforge.net/p/contools/contools/ci/master/tree/README_EN.deps.txt https://sourceforge.net/p/contools/contools/ci/master/tree/changelog.txt -
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APTTools
A collection of utilities for atom probe tomography analysis
A collection of command-line tools for atom probe analysis including: * Point data XML scripting language, load, transform, resize and otherwise alter point data * Radial Distribution Function analysis tools * Level-set tools for simulating shape transformations during experiments -
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CoolingPower
Print Steam Tables; Plot diagrams and cycles from equations of state
CoolingPower is NOT in a condition for use at this time. A couple of bugs have been discovered that severely affect the calculation accuracy. While I troubleshoot, use at your own risk. Once completed, CoolingPower will have the capability to plot diagrams of thermodynamic properties, construct Steam Tables, and plot thermodynamic cycles. Initial fluid will be water/steam, but functionality will extend to include a variety of working fluids. CoolingPower operates in GUI format and, for... -
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Aestel
Applications for data management
"Information is data in action", and, consequently, having good quality data is essential. The AESTEL package contains two highly configurable applications for data management: A data loader and a reporting application, i.e. DataLoader and AEREA, respectively. The data loader application applies user-defined instructions to validate, process and load data. The reporting application provides a query builder and spreadsheet template designer. Both applications work with any relational data... -
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UrJTAG aims to create an enhanced, modern tool for communicating over JTAG with flash chips, CPUs, and many more. It is a descendant of the popular openwince JTAG tools with a lot of additional features and enhancements.
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Java multiprecision calculator
Multiprecision calculator
Multipresicion calculator, based on Bigdecimal Java class . It has a library (BigMath) that makes calculations with Bigdecimal. It has also an expression parser to parse the user input. It allows you to store user defined variables and functions . You can operate with them to be used for calculations or for creating new functions with composition. With the new version, you can also calculate the derivative of a function. JDK-17 compatibility -
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Comet MS/MS search engine
Comet open source tandem mass spectrometry (MS/MS) search engine.
September 2021: the code repository has migrate to https://github.com/UWPR/Comet Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS database search. Supported input formats are mzXML, mzML, ms2, and Thermo RAW files. Supported output formats are tab... -
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astroTools
Command-line tools for astronomy and astrophysics
Command-line tools for astronomy and astrophysics, written in Fortran. -
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Pure C99 Quadratic Sieve 230-bit minute, RSA-100 factored, easily accessible on Windows and Linux. Hello and welcome at sourceforge.net, i'm your student at Université de Franche-Comté, Mon, 11 Jul 2022. This ~2500 lines Pure C factorization software : - is imediately compatible with Microsoft Windows, Linux (no one dependancy) - is a C99 command line factorizer from 0 to 300 bits (330 bits were factored in the lab) - is built so that you can easily use and test the software - use...
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SpectralWorks
View, manipulate, analyze (LS fit, SVD, FT), and make figs of, spectra
Program for viewing, editing, manipulating, and analyzing absorbance spectra. Simple arithnetic includes making linear combinatins of up to 10 spectra. Advanced functions include fitting spectra as LC of standard basis spectra, singular value decomposition, Fourier transform, differentiation, integration, global fitting of 3D titration and kinetic data. Graphics features allow composing Figures and export to postscript files which can be converted to pdf, imported into photoshop for...