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A MUD "totally" written in Perl. It runs an engine which relies on a extensible Perl MudLib and interprets user-programmable scripts in a fashion that reminds the old-time LPC MUD, but now everything is in Perl. It uses Perl v.5.10.0 and SQLite 3.3.7.
Version 0.2 of orphaned pyLAS from google code repository. Now written as both a commandline executeable and as a python class for extension/intergration with other projects.
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This trilateration routine will do anchor-free localization and distance estimation for nodes in a 2-D arrangement, where each node knows only distance information to as few as three other nodes. This code has been used for population biology studies.
The EdfExplorer Software is a plugin based architecture to transport and convert EDF files (ESRF Data File) to HDF5 (Hierarchical Data Format). It allows the exchange of an entire data acquisition folder to be manipulated by common internet free tool
Goldify is a set of tools that allow automated addition of links into electronic documents. Its main purpose is to allow such addition of links into documents that wish to link to the IUPAC GoldBook (http://goldbook.iupac.org).
SUBLEQ is a machine language in which there are no opcodes, the only operation available is substract and branch if negative or zero. This project offers a virtual machine for SUBLEQ programs. The included compiler allows you to write SUBLEQ more easy.
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s2vhdl extracts structural information from SystemC HDL programs. The output is in VHDL code and graphical diagrams. GCC compiler is used as a C++ frontend.
This is a webcam interface written in Python to control Google Earth. It is based on the atlasgloves.org project, and is in a very early development stage, this means: LOTS of bugs.
Tool kit for moving KML formatted Geospatial data into and out of other GIS packages such as ESRI ArcGIS, PostGIS, etc Supports reading and writing Google Earth files via Python and other GIS packages.
This is a Perl module for doing snp analysis based on shotgun sequencing reads and a reference genome sequence. Its primary input is the cigar alignment format outputted from ssaha2.
This is a simple C# commandline calculator. It evaluates arithmetic expressions and functions. Easy to extend. Features include factorials, powers, brackets, bracket normalization, polish notation, factorization, fields, and advanced error reporting.
A C-based bluetooth scanner. Uses multiple dongles to optimise the discovery process. Parameters can be adapted at the commandline. Can use some dongles to discover devices, and other dongles to inquire their names. Optimised for scanning crowds.
Tool for retrieve, via Web, statistics from bug trackers in free/open source software projects. The aim of this software is to provide researchers with statistics about bug-fixing process in a project
Natalie is a free Personal Assistant who does your bidding from the Windows Run Box. Features Research Assistant Mode, Natural Language Interface, and extreme Extensibility. Compare to IWantSandy. Looking for Help / Staff!
A family of programs for building coarse-grained models (eg. of macromolecules), manipulating them (geometrical transformations and more) and calculating their X-ray scattering patterns (1D and 2D too). Uses PVM for parallelization.
With OSM Parser it is possible to process OpenStreetMap geodata for various purposes. For example, it can be used to extract streets or other OSM elements for user defined regions to generate a street directory.
A Perl script that interfaces with the Devantech USB to I2C interface adapter. This script allows a user to read and write as a master to the i2c bus as well as set or get the value of the io pins.
MGARCH is a software library for R-Project to simulate and estimate various MGARCH processes. This project also provides convenience tools for preparing data, summarizing and visualizing results, prediction and documentation.
NoBlast provides a new extended user friendly csv output format and offers an option to correct the statistics when split databases are used for NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx).
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...