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A population-based method for DNA copy number analysis: recurrent copy number aberration indentification in multiple samples (with no need of single-sample calling). Developed for a quick analysis of high resolution and large population data.
Small tools to convert binary data format from spectrometers and oscilloscopes. Now the translators for * Starnford SR430 * LeCROY oscilloscope are included.
IMAS is a Visual Analytics system for the discovery of knowledge in genomic information. IMAS enables genomic scientists to rapidly analyze and visualize a set of microbial genomic sequences using tools such as Glimmer, Blast, Clustal-W, Primer3.
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A database and a web front end for physiologic data on animal feeding, developed with PostgreSQL and Django at NESCent (http://www.nescent.org) for Mammalian Feeding Working Group (http://www.feedexp.org).
Current development of the codebase is on Github at http://github.com/NESCent/feedingdb.
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Windows application for data mining with self-organizing neural networks. It works with text data files and has convenient user interface. Is solves data mining tasks of class Recognition, continuous value Prediction, and time series Forecast.
rSIGNAL - ruby Simple Inter-Interface Generic Aggregation Layer. It allows external data sources to be aggregated, store the aggregated data and print the aggregated data out in a transformed format to a file (or integrated HTTP server) on demand.
Data mining tool for sequences (e.g. trajectories on a map, visited web pages, etc.) that creates a succinct description of the sequences, given a taxonomy (e.g. regions and sub-regions in the map, categories and sub-categories of pages, etc.).
The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.
Siafu simulates individual agents and their context, from home to city-wide scenarios. As a developer, you use the API to write your simulation for the purposes of data-set generation, test or visualization, optionally hooking it to your own application.
This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.
This project hosts tools used for analysis of Gaussian Mixture Distributions (GMDs) which are used for statistical signal processing. The tools are libraries for implementing GMD operations and programs used to analyze properties of GMDs.
Logbus-ng consists in a set of tools to aid developers perform Log Analysis in all the stages: log generation, collection, distribution, storage and analysis. It is designed specifically for Field Failure DataAnalysis in critical distributed systems
Methods and testing of methods for automatic analysis of in situ cyclic
voltammetry data.
This, at least initially, is the code from my masters thesis, which was
done as a contribution to a larger project called Aevum. Aevum is being
developed at t
"""
E-Cell's source code repository has moved to GitHub!
https://github.com/ecell
The development of E-Cell now continues on GitHub.
The Subversion repository was abandoned.
"""
E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
Regexp testing tool allows to apply group of regexps to huge arrays of data (millions or so) in order to investigate search or search/replacement possibilities of regexp group.
FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra