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The aim of the cardiac atlas project is to establish a structural and functional atlas of the heart. This project is funded by the NIH grant and led by the University of Auckland, New Zealand.
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Belief Merger
A simple Belief Merging Prototype
Belief merging aims at combining several pieces of (possibly inconsistent) information coming from different sources. The goal is to produce a single consistent set of information, trying to keep the most of the information of the sources. A belief merging operator is the responsible for making the belief merging. With this tool you can compare the ΔΣ, ΔGMax and the Δps (PS-Merge) operators. -
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
In consanguineous families, as a result of inheriting the same genomic segments through both parents, the individuals have stretches of their genomes that are homozygous. This situation leads to the prevalence of recessive diseases among the members of these families. Homozygosity mapping is based on this observation and several recessive disease genes have been discovered with the help of this technique in consanguineous families. The researchers typically use SNP arrays to determine the... -
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ALTER is a web-based tool to transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.
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Bibtex Import
Imports bibtex references from MathSciNet
Uses MathSciNet to search for bibtex references. The matching references can then be edited and added to a local file. For information on how to use this software please consult the wiki. Requires a MathSciNet subscription. -
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A collection of projects I have developed in the past years. It contains: - a tool to compute height and angle of objects above horizon - a proof of concept of DFT and DWT to reduce audio files - a quantitative library with OOorg interface for Calc
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Avalon Cheminformatics Toolkit
Avalon Toolkit for SMILES-based cheminformatics services
The Avalon Cheminformatics Toolkit contains tools to render and canonicalize SMILES and manipulate MOL file and related formats as well as structure fingerprinting. -
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The JAccumulator package brings the convenient type conversion and ad hoc composition capabilities of Javascript to Java programming structures. JAccumulator is dependent upon the Jupperware (http://jupperware.sf.net) to provide Javascript-like associative list capabilities and the convenience of easy hierarchical construction.
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grepp
An ultimate text-analysing tool
A command line tool for text file analyis, filtering, splitting and reporting. Runs under Java (1.5+), supports plugins written in Groovy. Has nix and win batch files in distributions. -
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Cospace Dance
Robot for cospace dance
A complete set of code to build your own robot for cospace dance using: raspberry pi, arduino, xbee and blender, -
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AeroDataBase
Aircraft aerodynamic database
A collection of aerodynamic data in HDF format. The data is used in the semiempirical models of aircraft aerodynamic coefficients. Reference: Aircraft Dynamics: From Modeling to Simulation Marcello R. Napolitano, Wiley, 2012. http://eu.wiley.com/WileyCDA/WileyTitle/productCd-EHEP002021.html -
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MySqlTester
Mysql Veritabanı için bağlantı testti aracıdır.
Oracle MySql’ in ve MariaDb’ nin tüm versiyonlarında çalışması öngörülmektedir. Açık kaynaklı bir projedir. -
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µic is a modelling engine for simulations of microstructural development. It takes localied behaviours as input from the user and integrates the global behaviour, with the calculation of all interactions as required by the application.
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GPSInfo
Apl. móvil de Información georeferenciada + visor 3D escritorio
Plataforma de creación de información georeferenciada desde dispositivo móvil. Aplicación de escritorio 3D para explotación de la información. NEW: actualizada apk para soporte hasta Android 4.4 KitKat -
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Biogranat (Molecular Biology Graph Visualisation and Analysis Tool) is a new tool for the analysis and visualisation of large datasets.
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NeISS (National e-Infrastructure for Social Simulation) is a JISC funded project which will produce a platform for social simulation. Project Web site: http://www.neiss.org.uk
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CatMDEdit is a metadata editor tool for describing resources, mainly geographic information. Developed by IAAA (University of Zaragoza) and GeoSpatiumLab S.L., sponsored by IGN Spain. Technical details: Java, XML, multiplatform, multilingual.
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VSViewer3D
3D Virtual Screening Viewer
This project is an interactive viewer for 3D virtual screening data. -
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dna-bison
Bisulfite alignment On Nodes of a cluster
Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the... -
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LGML
LGPL GML parser
...The willing of the project is to be a starting point useful for developers that need to parse GML objects in order to use them, for example, in the context of OGC catalogue projects. The library is compiled using Java 1.5 or 1.6. For now, supported inputs are: LineString, MultiLineString, MultiPoint, MultiPolygon, Point, Polygon, MultiSurface (in an experimental way: the only child object handled is Polygon). At the following URL: http://95.110.227.201:8080/lgml is exposed a minimal web interface in order to test it. -
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IMPACT_S
Integrated Multiprogram Platform Analyze & Combine Tests of Selection
Maldonado E, Sunagar K, Almeida D, Vasconcelos V, Antunes A (2014) IMPACT_S: Integrated Multiprogram Platform to Analyze and Combine Tests of Selection. PLoS ONE 9(10): e96243. doi: https://doi.org/10.1371/journal.pone.0096243 -
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Mechaglot, Calculate Semantic Similarity
Calculate semantic similarity for any human and human-like languages
...The goal of this project is simple: Input two sentences of the same language, and obtain the number (from 0 to 1) denoting the similarity between the inputted sentences, according to semantic categories. This project models my previous project: https://sourceforge.net/projects/semantics/ Difference is, this project does not use any database and computes any Strings as an input. JAVA was the language of choice, due to availability of modelling tools. This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/. ... -
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