This software computes likelihoods for infinitely-many-sites sequence data under multiple merger coalescents. The likelihood can be computed exactly or approximated via importance sampling.
CNC Dynamics Sim is an environment for testing new motion control algorithms, path interpolators, and path planning strategies, and how these affect the dynamics of a CNC machine.
A simple but powerful bulk file statistics calculator. Given operation(s) and a list of files containing identical text fields and corresponding numerical fields this program calculates and outputs a similar file with the numerical op performed.
Echoproc is a piece of scientific analysis software used to extract physical ice sheet characteristics from radio echograms from experiments like the Center for the Remote sensing of ice sheets (https://www.cresis.ku.edu/)
CORPSE (CORPus SEarch) is a powerful search engine written in Java. The aim is to provide an efficient implementation of a word level inverted index search with various cool functions that can be used on very large corpora.
ChronoSVG generates a timing diagram, as used in electrical devices documentations, from a simple and intuitive ASCII source file. The output file is in SVG format, and makes use of CSS to defer the styling details to presentation time.
Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
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Library and tools for storing and retrieving arbitrary metadata
FoxHive is a general purpose cross-platform library and utilities for storing and retrieving semantic meta-data associated with files. Where metadata is stored in: a special directory, extended file attributes, embedded e.g. XMP, nepomuk or xesam.
This is a research-level program used to track protein translocation in live cell imaging experiments when the nucleus is not specifically marked by either stain or transfected fluorescent proteins.
xswifs stands for: cross SoftWare Interfaces.
This project provide examples (snippets) for interfacing various software tools and languages with various mechanism. It has been created to help in HW/SW co-simulation and to provide benchmarks.
This is a set of scripts that helps with processing of NMR pH titration data. These scripts allow for fitting (using R) and plotting of data of multiple residues. The program needs to be made more user friendly.
Artificial life simulation where computer programs (virtual organisms or VOs for short) compete on a grid for computer time. May the most intelligent VO win!
Adaptive Wavelet Applications on general domains - the goal still far away. But the first step is done. This project aims at introducing wavelet methods realized in C++. As building block it uses FLENS.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
Java program to create a (potentially multilingual) glossary of the unique words in any given Lojban text.
Note that the Sourceforge page for this was superceded by the Bitbucket repository: https://bitbucket.org/pretoriusjf/vlastezba/overview
Any further updates will be made there.
This is a multi-threaded Java program that tries to maximise CPU utilization by separating and distributing the computational part of the work from the file reading and writing part by using separate threads.
MediaWikiRevisionsExtractor extracts the history of a particular wiki page, computes the modifications made between each revisions and finally, stores the whole set of modifications in a file.
ruby-sphere is a set of libraries and user interfaces written in Ruby to calculate apparent positions of stars with a moderate accuracy. Its goal is to provide an easy way to plan astronomical observations.
My personal computing suite provides some programs I developed as a hobbyist and currently include a lambda calculus interpreter and a calculator which solves arithmetic expressions; both are written in C++.