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NullAllEst is the implementation of a maximum likelihood algorithm to estimate the frequency of a null allele in microsatellite genetic data. A Markov Chain Monte Carlo simulation is used to solve the likelihood function.
Molevolve is a Java library for running a GeneticAlgorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
IslandEv distributes a GeneticAlgorithm (like <a href="/projects/jaga">JaGa</a>) across a network (see <a href="/projects/distrit">DistrIT</a>) using an island based coevolutionary model in which neighbouring islands swap migrating individuals every
Galileo is a library for developing custom distributed genetic algorithms developed in Python. It provides a robust set of objects that can be used directly or as the basis of derived objects. Its modularity makes it easy to extend the functionality. The
MAGMA: Multiobjective Analyzer for Genetic Marker Acquisition
A geneticalgorithm for generating SNP tiling paths from a large SNP database
based on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks):
Hubley R., Zitzler
Java port and extension of MLC++ 2.0 by Kohavi et al. Currently contains ID3, C4.5, Naive (aka Simple) Bayes, and FSS and CHC (geneticalgorithm) wrappers for feature selection. WEKA 3 interfaces are in development.
A GeneticAlgorithm Training System in Python.
Gatspy provides the framework, the user provides the error
(fitness) function. Gatspy will evolve a solution that
attempts to minimize the error.
aVolve is an evolutionary/geneticalgorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Geneticalgorithm, but does include a primitive geneticalgorithm written in Python.
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GAZES - GeneticAlgorithm Zombie Eradication Simulation Grid-based simulator for zombie scenario. The units will use geneticalgorithm to determine their actions on a cycle by cycle basis. This is a school project, so is likely on hiatus for summer.