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Apolda is a plugin for the Gate framework (see http://sourceforge.net/projects/gate/) that annotates texts with labels of concepts from an arbitrary OWL-ontology.
A plugin for the VANTED system, called Glyph-based Link Exploration of Pathways (GLIEP). It helps to guide the navigation and exploration process of interconnected pathway visualization as well as insight into the overall interconnectivity.
Its an Eclipse 3.5 Plugin.
It can be used to find linear paths for unit testing of any method.
The linear path covers all the child methods and till leaf level of the hierarchy.
The packages which should be covered in the path can be controlled.
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Anna is lightweight Java framework to build pipeline systems of any kind.
It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
Ex-Crawler is divided into 3 subprojects (Crawler Daemon, distributed gui Client, (web) search engine) which together provide a flexible and powerful search engine supporting distributed computing. More informations: http://ex-crawler.sourceforge.net
CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.
Automata Based Programming Tool for implementing logic for J2SE, J2EE and Sybmian applications. Consists of Java FSM Framework and Eclipse Plugin parts. Plugin implements UML model editor, visual debugger, validator, compiler and interpreter for Eclipse
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This is a visual pipeline framework for batch processing data. It is a plugin to Eclipse Platform. It is a general framework designed to be customized for specific field. One example is http://sf.net/projects/camba
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
Plugin for JOSM (OpenStreetMap editor) that makes a grid of streets from only two. It traces parallels to the existing ones and make all intersections. We need it because our Country have a lot of cities with a regular design and lot of square blocks.
http://ewi.utwente.nl/~biorange/rshell - The RShell project is a plugin for the Taverna workflow system. It enables one to execute R scripts within the Taverna workflow system. The RShell processor is built on the RServe project. For more info:
Scan, the Semantic Content ANnotator, is a semantic pipeline that helps connecting information extraction tools to semantic database. UIMA-based, it allows easy plugin-writing: information extraction, ontology control, store in RDF Repositories.
TBLTools is a set of GATE processing resources that implements the Fast Transformation Based Learning Algorithm. You can train it to learn rules for NLP tasks such as Named Entity Recognition and Shallow parsing.
GrALoG is a tool for editing and visualising graph-like-structures and the results of algorithms running on them. Through it's plugins GrALoG is hugely extendable, i.e. plugin-developers can define their own graph-like structures and algorithms.
Cytoprophet is a Cytoscape plugin that helps researchers infer new potential protein (PPI) and domain (DDI) interactions. Users input a set of proteins and retrieve a network of plausible protein and domain interactions with a score.
As an Eclipse Plugin the COWOZ-CLient supports electronic paper prototyping of a distributed team of UI-Designers in sketching User Interfaces in the early stage of UI-Design together with iterative and distributed usability testing.
CANTop is an open source project aimed at creating a powerful graphical interface for CANBUS enabled vehicles. It will be designed specifically for persons looking to do Plugin-Hybrid (PHEV) conversions. QT will be used for the initial interface.
The EURP OntoLookup is a CREOLE plugin for GATE http://www.gate.ac.uk/ which uses an OWL ontology for lookup. It has a very fast implementation based on a tree of hash maps.
WOOKI is a peer-to-peer wiki. It based on unstructured p2P network with data replication. WOOT framework synchronizes data. SWOOKI is a semantic extenion of WOOKI. It is implemented as a plugin of WOOKI. SWOOKI is peer-to-peer semantic wiki.
Docgen plugin for Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo...). Images, Graphs, URL are readyly included in reports.
NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues.
Jaude is "Java pour les Astronomes Utilisateurs de Detecteurs Electroniques". Jaude is Eclipse RCP and plugin based. So it will provide an Eclipse interface for JSky library (http://archive.eso.org/JSky/).