Search Results for "assembly source code" - Page 20
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Showing 1340 open source projects for "assembly source code"
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An open-source implementation of our network-based target deconvolution approach, named target addiction score (TAS). License: The TAS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well.
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GNomEx
A Genomic LIMS and Data Repository
Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. -
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
...The gameplay is better experienced in 0.2 which is controlled with the mouse so you dont have enough freedom of movement compared to webcam. This small file contains its own source code including occamserver, a tiny general java server I built which I'll adjust to allow http streaming connections to stay open for faster ajax than a new web call each time. The reshaping and bouncing physics is by springs. -
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ooPorter
A Porter stemming or stemmer algorithm coded in ooRexx
...Output from the program ends up in the terminal window (standard out) and may be redirected to an output file. Syntax: rexx ooPorter myInputfile.txt > myOutputfile.txt The program only works for stemming English words. The source code is distributed under a free beer license; you are free to use the ooRexx source code as you please and no restrictions whatsoever apply as far as the type of beer is involved. -
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PPMScope
Microcontroller based PC Oscilloscope
PPMScope is a do-it-yourself oscilloscope with an open source design. The intent is that the project can be constructed by an electronics hobbiest using the instructions included. The design is a compromise between features and cost. The bandwidth is lower than a commercial scope, so it's use is limited to signals of 500 kHz and below. It's sample buffer is also smaller than a commercial scope, however sufficient for most oscilloscope functions. This is a version based on the... -
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MF-OWHM | MODFLOW OWHM
Simulation, analysis, and management of the movement of water
This page is kept for those that want to use the legacy v1 version. For current download, source, and information please go to: https://code.usgs.gov/modflow/mf-owhm ----------------------------------------------------------------------------------------------------------- The One-Water Hydrologic Flow Model (MODFLOW-OWHM, One-Water) is an integrated hydrologic flow (IHM) model that is an enhanced fusion of multiple MODFLOW (MF) versions. -
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Inno Setup Toolbar Advanced for VB6
Deploy Visual Basic 6.0 Applications Easily
...You can now deploy applications straight from your Visual Basic 6.0 projects via Inno Setup by using this Visual Basic Add-In. It is fork and improved version of Inno Setup Toolbar 2.0 by Coder_Ghost of Planet Source Code inheriting the characteristics of Package Deployment Wizard. Now the deployment of applications written in Visual Basic 6.0 is now much more easier and less troublesome than before. System Requirements: * Visual Basic 6.0 IDE * Inno Setup (version 4.0 or higher) NOTICE: * Visual Basic 6.0 is a trademark of Microsoft Corp... -
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting... -
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DualSPHysics
C++/CUDA/OpenMP based Smoothed Particle Hydrodynamics (SPH) Solver
DualSPHysics is based on the Smoothed Particle Hydrodynamics method and can be downloaded from the official website (www.dual.sphysics.org). The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes based on the SPHysics FORTRAN project (www.sphysics.org) that are designed to deal with real-life engineering problems and are provided along with pre-compiled binaries and source for Windows/Linux/Unix as well as a number of example test cases. -
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RDKit
Open-Source Cheminformatics and Machine Learning
A collection of cheminformatics and machine-learning software written in C++ and Python. NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and similarity searches. -
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ImagingBook
Java source code for image processing books by Burger & Burge
NOTE: The source repository for this project has been moved to a NEW LOCATION: ************************************************************************************ https://github.com/imagingbook/imagingbook-public ************************************************************************************ -
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wxEcMath
Easy mathematics in wxWidgets
Tiny library written in C++/wxWidgets designed to manage mathematical objects : parser of expressions, plots, matrixes and complex numbers. Ansi and Unicode are supported. Documentation and rich samples are provided. Compiles with MSVC, BCC, GCC and Clang. Now on Git. -
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....: "HeatmapGenerator: High performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline." Source Code for Biology and Medicine, 2014 9:30] HeatmapGenerator source code is available at: https://github.com/Bohdan-Khomtchouk/HeatmapGenerator Bohdan Khomtchouk wishes to acknowledge the support of the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program. HeatmapGenerator is released under the GNU GPL.
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PromKappa 2.0 (DNA patterns in Java)
PromKappa 2.0 (Java source code and bin)
A Java adaptation of DNA patterns based on the article "Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters". by Ilie Guta (Java source code for DNA patterns) -
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Moose
Multiscale Neuroscience and Systems Biology Simulator
Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code. -
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xlsLib
C++/C library to construct Excel .xls files in code.
A multiplatform C++ library for dynamic generation of Excel .xls files containing multiple worksheets. Unlike .csv files, these can be directly opened by Excel and thus provide an excellent way to output large data sets that require further analysis. To see the latest changes, select "Files" and view the README text displayed at the bottom of that pane. IMPORTANT: Major changes are contained in the current SVN source. If you have time please try to use it or the... -
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Petri-LLD is a graphical development environment for real-time automation control and is written in Java. It is based on a form of Petri net, and compiles to a number of programmable logic controller (PLC) languages as well as Java and Visual Basic.
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NiCE
Modeling and Simulation made NiCE!
Notice! This project is now the Eclipse Integrated Computational Environment (ICE)! The new project page is www.eclipse.org/ice and the updated source code is at www.github.com/eclipse/ice . Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes. -
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DNA patterns & application
A software for generating DNA patterns
...BMC Genomics 2012, 13:512. [2] Gagniuc and Ionescu-Tîrgoviste. Gene promoters show chromosome specificity and reveal chromosome territories in humans, BMC Genomics 2013, 14:278. Source code VB6 (Visual Basic 6.0) -
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PneumaticDampener
Software to analyze the behaviour of a pneumatic dampener
This software perform the analysis of the pneumatic dampener under dynamic load. The loading is defined by the pressure table. For results the Adams integration scheme is used. Source code will be opened as soon as possible. -
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linq-cube
LinqCube is a small utility library to define in-memory cubes.
LinqCube is a small utility library to define measures and dimensions in code an do in-memory cubes against LINQ queries. Why? Often you have the requirement to build some reports. For example all open cases over time, all open cases over time and status etc. Your queries are complicated enough to end up in large SQL Views or dozen's of single SQL Queries. Implementing a real OLAP Cube would be an overkill, because you only have 10.000s of rows. LinqCube was build to reduce SQL... -
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Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
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PortOpt
A portfolio-optimizer using Markowitz(1952) mean-variance model
PortOpt [Portfolio Optimizer] is a C++ program (with Python binding) implementing the Markowitz(1952) mean-variance model with agent's linear indifference curves toward risk in order to find the optimal assets portfolio under risk. You have to provide PortOpt (in text files or - if you use the api - using your own code) the variance/covariance matrix of the assets, their average returns and the agent risk preference. It returns the vector of assets' shares that composes the optimal... -
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Control Interface Victor 86C, Voltcraft
Control Voltcraft Power Supply and Victor 86C Multimeter
ANNOUNCEMENT Project has moved to a proprietary website! http://www.instruman.it Updated source code available at https://instruman.codeplex.com/ This is an interface used to program and control Voltcraft DPPS-32-15 Power Supply, and to log data from Victor 86C Multimeter. It's an all-in-one solution to use the two instruments at the same time for Scientific, Research and Study purposes. Features avaible are the following: -Victor 86C USB HID connection protocol -86C data reading and logging -COM port selection -Continuous reading of Voltage and Current -Continuous logging of Voltage and Current in a Chart with the option to export data to csv file -Possibility to set logging rate from 50 ms -Turn ON and OFF instrument -Set Voltage and Current -Set a custom voltage loop to play and reiterate -Reiteration possible in three ways: for a fixed time, for a fixed number of cycles and until the STOP button is pressed -
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CoreTML framework is an open-source template-based configuration system allowing the developer to create parametrized templates by inserting special content to any text files. Its main purpose is to serve as a toolkit for semiconductor IP core creation (based on VHDL/Verilog).
