Search Results for "scripts"
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Showing 32 open source projects for "scripts"
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Cloud tools for web scraping and data extractionAutomate web data collection with cloud tools that handle anti-bot measures, browser rendering, and data transformation out of the box. Extract content from any website, push to vector databases for RAG workflows, or pipe directly into your apps via API. Schedule runs, set up webhooks, and connect to your existing stack. Free tier available, then scale as you need to.
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contools
console tools, batch scripts, shell scripts, shell tools, utilities
https://sourceforge.net/p/contools/contools/ci/master/tree/README.md https://sourceforge.net/p/contools/contools/ci/master/tree/README_EN.txt https://sourceforge.net/p/contools/contools/ci/master/tree/README_EN.deps.txt https://sourceforge.net/p/contools/contools/ci/master/tree/changelog.txt -
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Airborne Data Processing and Analysis
Software to processing and analyze of airborne measurements.
The Airborne Data Processing and Analysis (ADPAA) package is an open-source software package containing a collection of programs and scripts to process and analyze data from in-situ instruments deployed on airborne platforms. The ADPAA package was started to process data on the North Dakota Citation Research Aircraft but has been used to process data on many airborne platforms. The software methodology used in ADPAA is provided in the peer-review publication: Delene, D. -
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SimPET
A web platform for the MC simulation of realistic brain PET data
...The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET scripts: https://github.com/txusser/brainviset_simset https://github.com/txusser/simpet (New version pre-alpha) You can also upload your own phantoms to simulate. Currently the platform incorporates MC models for the GE Advance, GE Discovery ST and Siemens mCT. More models are on the way. You can also access all the previously simulated datasets from the dev team to test your quantification pipeline (Files section in this page). ... -
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MAF
Bash Framework to combine many preprocessing and alignment tools
DNA and RNA nucleotide sequences are an ubiquitous element of all biological cells and are serving on one hand as a comprehensive library of capabilities for the cells and on the other as an impressive regulatory system to control cellular function. The presented multi-alignment framework (MAF) should give researchers a simple sequence alignment platform as a functional template, flexible enough to adjust all steps but also comprehensive enough to join many different tools and custom... -
Grafana: The open and composable observability platformGrafana is the open source analytics & monitoring solution for every database.
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. -
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Amplicon_Sequencing_Worfklow
Analyzing amplicon data from sequences to stats
This is a collection of scripts and instructions on how to analyzing amplicon sequence data (i.e., 16S, ITS2, & other marker genes). I created this workflow to create a consistent set of methods for analyzing amplicon sequence data, from when you first receive the sequence data to statistical analyses & data visualization. All you need is to have the latest version of R installed, some experience with the command line & shell, and enough memory to run all of the programs. -
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SOLIDWORKS for Linux
This is a project, where I give you a way to use SOLIDWORKS on Linux
SOLIDWORKS-for-Linux is a user-contributed script and environment setup project that enables running SOLIDWORKS, the professional 3D CAD software, on Linux via Wine and custom configurations. Since SOLIDWORKS is officially only available for Windows, this project offers a comprehensive solution including setup scripts, dependencies, and workarounds to help engineers, designers, and students use it on Linux-based systems. While not officially supported, it aims to bridge the platform gap with the help of community collaboration and open-source tools. -
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UnsupervisedMT
Phrase-Based & Neural Unsupervised Machine Translation
...Training relies on denoising auto-encoding and back-translation, with on-the-fly, multithreaded generation of synthetic parallel data to continually refresh supervision signals. The project also provides scripts to fetch and preprocess monolingual data, learn BPE codes, and train cross-lingual embeddings that bootstrap unsupervised alignment between languages. Beyond the core EMNLP 2018 setup, the codebase exposes additional, optional capabilities such as multi-language training, language model pretraining with shared parameters, and adversarial training. -
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optpack
FE simulation based automatic global optimisation in modern Fortran
A collection of Fortran 2003, 90 and 77 routines, modules and programs for automatic simulation based global constrained optimisation. The initial application is for FE simulation of elasto-plastic buckling of steel rods aimed at tuning the hardening model. Unix shell scripts are used extensively. High concurrency is achieved with parallel multi-start global search and with parallel MPI FE. Powell's BOBYQA or LINCOA are used (not included in this package). Automatic mesh generation of 3D cylinders is provided + automatic boundary conditions, all via Fortran and shell scripting. -
Desktop and Mobile Device Management SoftwareDesktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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XmgFit
A wrapper to use Xmgrace's curve fitting capability on the shell.
XmgFit is a wrapper for Xmgrace (*) allowing to use comfortable the non-linear curve fitting capability of Xmgrace from the command line. Therefore the capabilities are limited by xmgrace. Please refer to the xmgrace users guide for more details. It is also handy to incorporate in shell scripts. The -s or --scripty option returns all result values xmgrace provide in an EVALuable format to make them easy available in shell scripts. *) http://plasma-gate.weizmann.ac.il/Grace/ -
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Cadence 614 Installer
Cadence 614 installing scripts with source files
this code include automation for installing Cadence614 with Calibre2011 all you need to do is to install Centos 6.5 32bit on your machine http://archive.kernel.org/centos-vault/6.5/isos/i386/CentOS-6.5-i386-LiveCD.iso and the scripts will do the rest -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic, sequence variation, and expression datasets is now available. ... -
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PolySim
Polymer simulation utilites
...For specific non-pdb input/output of 2nd program there are convertation utils also available. Programs are expected to compile in gcc under cygwin or pure linux environment. Scripts to run many copies of program under pbs/torque cluster system are also available. -
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manticora
ternary logic calculator
Some scripts for boolean calculation, including a parser. Ternary logic support. Everything is written in Posix Sh. -
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SubString is a set of shell scripts implementing substring reduction and frequency consolidation of word n-grams.
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fluids-sh
acquire fluid properties from the NIST Chemistry WebBook
...This makes it possible to introduce it in shell scripts to automatize the analysis of other data, to compare or just to save time. -
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r4st
A database rapid application development tool
The r4st ("Our Forest") project is a set of tools to assist with the rapid development of a database application. It uses shell scripts to drop/add Postgresql database tables/views with data loaded from sql and csv files. This process allows users to apply changes then re-build the system. It is essentially a customizable database regression system. The base schema and data module represent a plant database intended for educational and scientific usage. -
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Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.
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NaRIBaS
Unix-based preparation and analysis toolbox for molecular simulations
Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting framework rather than a black-box software. ... -
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ipmems
Real-time data acquisition and visualization software
Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module. -
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Shell-scripts for the conversion & visualization of time series in raw MBDyn-ASCII-output format resulting from MBDyn multi-body-system simulations . Forms a minimalistic interface to make post-processing of MBDyn-bulk-data easier and more comfortable.
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An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be dynamically extended to use proprietary ODBC API driver in many easy ways. It is bundled with scripts to ge
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In this very first part of the project OpenSpaceSyntax is a collection of functions in shall scripts oriented to the calculation of classic measures of a space syntax analisys procedure for urban fabrics and based on GIS-GRASS (grass.itc.it).
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Biospha is a suite of perl scripts based on bioperl toolkit intended to help researches to manage large sequence file. With BIOSPHA you can classify each sequence according to the NCBI taxonomy. You also can get all taxonomic info from a GI or Taxid.
