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MEMBPLUGIN is a membrane analysis tool for molecular-dynamics simulations. It is a collection of visual and command-line tools that can be run within the Visual Molecular Dynamics (VMD) environment to analyze biomolecular simulations of lipid bilayers.
Unix-based preparation and analysis toolbox for molecular simulations
...Concepts for efficiently storing and analysing large files in conjunction with graphical visualization and numerical data processing are presented in a Manual.
A documented script collection that allows reproducing all simulations and analysis results presented in the Doctoral thesis of the author.
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tkCybernetics is a small grafical tool for rapidly setting up simulations of simple cybernetic systems. It was designed for didactic purpose but might be useful for the quick test of some circuit too.