Search Results for "linux engineers toolkit"

CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal.

QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).

GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software (https://www.virtualbox.org/) on your Linux, Windows or Mac computer. The GISBox is free and open, allowing it to be freely distributed, duplicated and passed around, even with your own datasets and in-house applications. ...

FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.

This is a small R package for doing Weibull-based reliability analysis. This R package is now obsolete and has been superseded by 'project Abernethy' on http://r-forge.r-project.org/projects/abernethy/.

Development of a common “open source” tool for assessing the accuracy of parameter estimates collected within the framework of the DCR (EU Regulation 1639/2001 and 1581/2004)

Syzygy is a toolkit for the analysis of targeted (pooled/individual) resequencing datasets.

We have moved, the project is now at http://distancesampling.org

ANOSE is a web application (a web site) that allows software engineers to collect information about software projects and perform statistical analysis on the data collected. A key goal in ANOSE is to provide an easy to use user interface and efficient da

A library of R packages for use in fisheries modelling, including the evaluation of management strategies and stock assessment.

GEOSS (Gene Expression Open Source System), formerly known as GeneX Va, provides a web-based interface for the storage and analysis of Affymetrix GeneChipŽ and other microarray data. It has been developed by engineers at the GeneChip/Microarray Bioinform

A suite of tools for discovering and genotyping genome structural variation from sequencing data, including the Genome STRiP algorithm.