Showing 43 open source projects for "learning linux command line"

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  • 1
    DetectiV is an R package for the analysis of pathogen detection microarrays
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  • 2

    Pop-seq

    Population simulator to solve next generation sequencing questions

    Pop-seq is a perl based simulation tool, for generating any kind of mapping population using an user defined recombination landscapes. Combined with the Seq-sim tool you can generate pooled or bar-coded next generation sequencing biased outcomes. This tool were used to solve reappearing question in a experimental design (e. g. of how many plants or sequencing depth is advisable in a back crossed or out crossed scenario )
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  • 3
    R packages supporting parallel computing.
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  • 4
    GEPETTO - Gene Prioritization in Java

    GEPETTO - Gene Prioritization in Java

    GEPETTO (GEne Prioritization ExTended TOol)

    GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein...
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    Eptura Workplace Software

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  • 5

    colonyzer image analysis software

    Image analysis estimating cell density in arrayed microbial cultures

    Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and...
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  • 6

    RMol : SD/Molfile information in R

    RMol: Transforming SD/Molfile structure information into R Objects

    RMol is an R script with a collection of functions to link information of SD/Molfile structure databases with powerful graph analysis packages in R.
    Downloads: 4 This Week
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  • 7
    The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.
    Downloads: 1 This Week
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  • 8
    An R package that performs forward-backward fragment assembling segmentation. Reference: BMC Bioinformatics. 2007 May 3;8:145.
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  • 9
    Perl code scafflod for the automatic execution of main Next Generation Sequencing data processing and analysis.
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  • 10
    clusterCons
    An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.
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  • 11
    This package, for R environment, detects DAE peaks ratio on data gotten from LightCycler instrument.
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  • 12
    rdv-framework is designed to evaluate and compare ecological conservation reserve selection alogrithms .
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  • 13
    GenCart: Genome Cartology in the R Statistical Programming Language
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  • 14
    MGARCH is a software library for R-Project to simulate and estimate various MGARCH processes. This project also provides convenience tools for preparing data, summarizing and visualizing results, prediction and documentation.
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  • 15
    RmiR is an R package for the analysis of microRNA and gene expression microarrays. The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...
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  • 16
    Celsius is a data warehouse that provides web services for upload, archival, download, annotation, quantification, and normalization of all Affymetrix microarray platforms.
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  • 17
    R Tools for Biologists (RT4Bio) is a multi-functional package writen in R language developed in the Laboratory of Behavioral and Computational Ecology at State University of Montes Claros - MG - Brazil. Formerly known as RRJ.
    Downloads: 7 This Week
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  • 18
    Tools to build molecular-docking activity prediction models by PLS regression with iterative training and pose-selection. Descriptors include (i) docking score(s), (ii) pharmacophore features, (iii) multi-feature descriptors learned by decision trees.
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