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...There are also instructions provided in case you are running these analyses via a computing cluster/Slurm workload manager.
You can choose to go through the workflow using either an Rmd script, an html file, or a PDF, or via the homepage link provided.
If you have questions or concerns, please don't hesitate to reach out. Thanks!
Identification of mitochondrial structural alterations
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided.