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Showing 28 open source projects for "sample"
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The Missing Semester
The Missing Semester of Your CS Education
The Missing Semester is a course and repository that teaches the engineering skills often skipped in traditional computer science curricula: command-line fluency, shell scripting, editors, version control, debugging, data wrangling, and automation. It includes lecture notes, exercises, and sample solutions that encourage hands-on practice rather than passive reading. The curriculum demystifies tools like bash, vim, git, and make, showing how to combine them into efficient workflows that scale from homework to production systems. Lessons dig into practical topics such as environment management, job control, shell pipelines, profiling, and reproducibility, with an emphasis on habits that save time and prevent errors. ... -
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rx2fits
HF/VHF spectrosopy code for the rx888mk2 direct-sampling receiver
...Utilities for device enumeration, firmware upload, display of FITS header, file viewing, and for measuring sample rate and sample statistics are provided. The device interface is Ruslan Migirow's librx888 and dropped samples at 130 MHz are negligible. Runs on linux computers under .Net. -
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OpenCV
Open Source Computer Vision Library
The Open Source Computer Vision Library has >2500 algorithms, extensive documentation and sample code for real-time computer vision. It works on Windows, Linux, Mac OS X, Android, iOS in your browser through JavaScript. Languages: C++, Python, Julia, Javascript Homepage: https://opencv.org Q&A forum: https://forum.opencv.org/ Documentation: https://docs.opencv.org Source code: https://github.com/opencv Please pay special attention to our tutorials! -
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MCPower
MCPower — simple Monte Carlo power analysis for complex models
...It guides users through the full workflow across three tabs: Model setup (formula input with live parsing, CSV data upload with auto-detected variable types, effect size sliders, and correlation editing), Analysis configuration (find power for a given sample size or find the minimum sample size for a target power, with multiple testing correction and scenario analysis), and Results (interactive charts, exportable tables, and auto-generated Python replication scripts). Supports both standard linear models and mixed-effects models. Additional features include analysis history, configurable scenarios, and built-in documentation. -
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5
KherveFitting
Fit X-ray Photoelectron Spectroscopy (XPS) and XAS data
KherveFitting is a full featured XPS, XAS and Raman fitting software for Windows & macOS that is simple and easy to use. KherveFitting can open Excel files (.xlsx) or import/convert .vms, .avg, .kal, .spe (Thermo, Kratos, Specs, Scienta, Omicron, Phi) files into Excel format. 5 background types available: Tougaard, Shirley, Smart, Adaptive Smart. Various peak fitting models: Product and Sum of Gaussian and Lorentzian (GL & SGL), Voigt, Asymmetric Lorentzian (LA), Doniac-Sunjic (G*DS) and... -
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sidmon5.net
Sudden ionospheric disturbance monitor with Stokes data product
This package is a VLF receiver for monitoring VLF transmitter signals for evidence of transients indicating ionospheric disturbances, usually caused by x-ray bursts from the sun. It takes sample pairs from dual-channel sound cards and spectrally processes them to Stokes parameters. Data are plotted as time series and in scatter plots. -
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XISMuS
X-Ray Imaging Software for Multiple Samples
...IMPORTANT FIXES in respect to base v2.0.0 version: v.2.5.0 introduces the Differential Attenuation and Cube Viewer utilities, and migrates user database to *.json files v2.4.3 fixes a with K element in the fit-approx method v2.4.3 fixes and issue where saving plots with fit-approx or a auto-wizard could freeze the software v2.4.2 introduces Image Viewer to Mosaic v2.4.1 fixes an issue in merging H5 or EDF datasets with Mosaic Full changelog at https://linssab.github.io/history X-Ray Fluorescence Imaging Software for Multiple Samples is an open source software to manipulate and study macro-X-Ray Fluorescence (MA-XRF) datasets. XISMuS also works as a sample management tool, where you can easily change between datasets (samples) and compare, cross-interact and normalize them. -
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...Motu handles, extracts and transforms oceanographic huge volumes of data without performance collapse. This client enables to extract and download data through a python command line Indesol project sample: http://www.indeso.web.id/indeso_wp/index.php/faq/30-6-how-to-write-and-run-the-script-to-download-indeso-met-ocean-data
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DEBay
Deconvolutes qPCR data to estimate cell-type-specific gene expression
DEBay: Deconvolution of Ensemble through Bayes-approach DEBay estimates cell type-specific gene expression by deconvolution of quantitative PCR data of a mixed population. It will be useful in experiments where the segregation of different cell types in a sample is arduous, but the proportion of different cell types in the sample can be measured. DEBay uses the population distribution data and the qPCR data to calculate the relative expression of the target gene in different cell types in the sample. The user manual of DEBay: https://sourceforge.net/projects/debay/files/UserManual.pdf Sample data: https://sourceforge.net/projects/debay/files/Test_data/ Citation Information: Vimalathithan Devaraj, Biplab Bose. ... -
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CMD Plot Tool
Calculates and plots Colour Magnitude Diagrams from Astronomical data
...It works “out of the box” and does not require any installation of development environments, additional libraries or resetting of system paths. The tool is available as a single application/executable file, with the source code, on Sourceforge. Sample data is also bundled, to demonstrate its complete functionality to users. Other functionality within this application is the ability to convert DAOPHOT magnitude files to CSV format. -
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Acoustic Research Tool (ART)
Acoustic Simulation Library for Frequency and Time Domain Simulations.
ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX... -
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NICOS
Client/Server based experiment and instrument control system
Client/Server based experiment and instrument control system -
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CorNetMap
A tool for Gene Expression Correlation Network
...Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation: https://sourceforge.net/projects/cornetmap/files/Documentation_corNetMap.pdf Sample data for testing: https://sourceforge.net/projects/cornetmap/files/Test%20Data/ Citation: Cite CornetMap as " Khaund, A. Bose, B. CorNetMap. https://sourceforge.net/projects/cornetmap " Credit: Abhigyan Khaund, Biplab Bose, IIT Guwahati -
14
BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining. -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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Template Code Set for JModelica
This is a template Python code set to use JModelica easily.
This is a template Python code set which makes it easy to use JModelica to solve optimal control problem. The template includes a sample model definition file (opt_definition.mop) and a .bat file (run_me.bat) to start its calculation. After download the template, immediately you can run JModelica by only double-clicking run_me.bat file, and obtain the optimization result. Please go to the page given below for the information of how to start to use this and its details. -
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Point Cloud Skinner for Blender
Python script (addon) for Blender to skin point cloud (verts to face).
...It can skin any shapes of point clouds, such as a surveyed geography point cloud that represents a landform somewhere, a fluid volumetric point cloud obtained by numerical fluid simulation, or anything you like. You can see some sample meshes that the script produced in "Results" part below. -
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pure python polyfit
python2/3: compute polyfit (1D, 2D, N-D) without thirdparty libraries
...also can be used for least squares solution computation and for A=QR matrix decomposition. Tested with python 2.7 and 3.4 Consider donating to this project: https://sourceforge.net/p/purepythonpolyfit/donation For a Sample use, refer to the WIKI -
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PyBrella
Python script to automate umbrella sampling with AMBER
PyBrella is a script designed to automate the umbrella sampling process, using the AMBER molecular dynamics package. -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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Aelius Brazilian Portuguese POS-Tagger
Python, NLTK-based package for shallow parsing of Brazilian Portuguese
Aelius is an ongoing open source project aiming at developing a suite of Python, NLTK-based modules and interfaces to external freely available tools for shallow parsing of Brazilian Portuguese. It also includes language resources such as language models, sample texts, and gold standards. Presently, Aelius already offers facilities for POS-tagging and chunking corpora and outputting annotations in different formats, such as in XML in the TEI P5 encoding scheme. -
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Bika Open Source LIMS/LIS
Web based laboratory information management system
A web-based LIMS (Laboratory Information Management System) · Built in Plone · Professionally supported · Making waves · bi:ka (Zulu): tell it as it is More information and links to manuals, user forums, support and translations are available at https://www.bikalims.org/support-and-service-provision Bika community: www.bikalims.org Main project sponsor, Bika Lab Systems: www.bikalabs.com Inquiries: lemoene@bikalabs.com -
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X-Freq
X-Ray Reflectivity Frequency Analysis
Analyze the thicknesses of a sample from an x-ray reflectivity dataset using Fourier Transform techniques. -
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HOPSA, high oxygen pressure sputter automation, is a Python 3 project to control a step wise sample creation Process. Although written for this specific task it is easy to adopt for any experimental task which changes hardware parameters and waits for a specific condition before proceeding. The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator. The communication with the hardware is independent of the GUI and any number of devices can be selected. ...
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PyExPsiN is a Python crossplatform (Linux/Windows) module for made easy writing psychological experiments. Right now includes functions for DMTS (Delayed Matching to Sample), N-Back, Spatial N-Back, "Grammatical", Mixed Dots, Stroop, and more.
