Showing 3 open source projects for "graph theory"

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  • 1

    xPyder PyMOL Plugin

    Analyze and visualize coupled residues and their networks in proteins

    xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level.
    Downloads: 1 This Week
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  • 2
    pyGraph is tool that hopefully will help graph theory students by analizing,transforming and creating graphs Dependencies: python and pygame
    Downloads: 0 This Week
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  • 3
    This application is designed to solve problems of transshipment. This problem of the graph theory consists in finding a negative stream on the arcs which minimizes the total cost of the transport in a network R(V,E,b,c) where : - V = vertex - E
    Downloads: 0 This Week
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