PBSuite
Software for Long-Read Sequencing Data from PacBio
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----- PBHoney -----
Read The Paper
http://www.biomedcentral.com/1471-2105/15/180/abstract
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.